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import re def get_seconds_from_duration(time_str: str) -> int: """ This function will convert the TM1 time to seconds :param time_str: P0DT00H01M43S :return: int """ pattern = re.compile('\w(\d+)\w\w(\d+)\w(\d+)\w(\d+)\w') matches = pattern.search(time_str) d, h, m, s = matches.groups(...
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def get_protecteds(object: Object) -> Dictionary: """Gets the protected namespaces of an object.""" return object.__protecteds__
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def pah2area(_position, angle, height, shape): """Calculates area from position, angle, height depending on shape.""" if shape == "PseudoVoigt": fwhm = np.tan(angle) * height area = (height * (fwhm * np.sqrt(np.pi / ln2)) / (1 + np.sqrt(1 / (np.pi * ln2)))) return area ...
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def config(key, values, axis=None): """Class decorator to parameterize the Chainer configuration. This is a specialized form of `parameterize` decorator to parameterize the Chainer configuration. For all `time_*` functions and `setup` function in the class, this decorator wraps the function to be calle...
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def dot2states(dot): """Translate a dot-bracket string in a sequence of numerical states""" dot = dot.replace(".", "0") # Unpaired dot = dot.replace("(", "1") # Paired dot = dot.replace(")", "1") # Paired return np.array(list(dot), dtype=int)
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def mel_to_hz(mels, htk=False): """Convert mel bin numbers to frequencies Examples -------- >>> librosa.mel_to_hz(3) 200. >>> librosa.mel_to_hz([1,2,3,4,5]) array([ 66.667, 133.333, 200. , 266.667, 333.333]) Parameters ---------- mels : np.ndarray [shape=(n,)],...
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import numpy as np def load_images(images): """ Decodes batch of image bytes and returns a 4-D numpy array. """ batch = [] for image in images: img_np = readImage(image) batch.append(img_np) batch_images = np.concatenate(batch) logger.info('batch_images.shape:%s'%(str(bat...
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def stats_hook(): """ decorator to register a stats hook. :raises InvalidStatsHookTypeError: invalid stats hook type error. :returns: stats hook class. :rtype: type """ def decorator(cls): """ decorates the given class and registers an instance of it into available...
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def safe_infer(node, context=None): """Return the inferred value for the given node. Return None if inference failed or if there is some ambiguity (more than one node has been inferred). """ try: inferit = node.infer(context=context) value = next(inferit) except exceptions.Infer...
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import functools def catch_exception(func): """ Returns: object: """ @functools.wraps(func) def wrapper(*args, **kwargs): worker = kwargs['error_catcher'] try: return func(*args, **kwargs) except Exception as e: print('stdout:', worker.stdou...
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def RandomCrop(parent, new_shape, name=""): """\ Crop an image layer at a random location with size ``[height, width]``. :param parent: parent layer :param new_shape: [height, width] size :param name: name of the output layer :return: CropRandom layer """ return _eddl.RandomCrop(parent,...
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import time def get_linear_sys(eqns, params): """Gets the linear system corresponding to the symbolic equations Note that this function only work for models where the left-hand side of the equations all contain only linear terms with respect to the given model parameters. For these linear cases, this...
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def slightly(membership: npt.ArrayLike) -> npt.ArrayLike: """ Applies the element-wise function fn(u) = u^(1/2). :param membership: Membership function to be modified. >>> from fuzzy_expert.operators import slightly >>> slightly([0, 0.25, 0.5, 0.75, 1]) array([0. , 0.16326531, 0.9969618...
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def int_max(int_a, int_b): """ max(a, b) """ if int_a > int_b: return int_a else: return int_b
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def extract_depth_map(frame): """ Extract front-view lidar camera projection for ground-truth depth maps """ (range_images, camera_projections, range_image_top_pose) = frame_utils.parse_range_image_and_camera_projection(frame) for c in frame.context.camera_calibrations: if dataset_pb2.CameraName.Name.Nam...
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from .functions import express def cross(vect1, vect2): """ Returns cross product of two vectors. Examples ======== >>> from sympy.vector import CoordSys3D >>> from sympy.vector.vector import cross >>> R = CoordSys3D('R') >>> v1 = R.i + R.j + R.k >>> v2 = R.x * R.i + R.y * R.j + ...
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def get_cognates(wordlist, ref): """ Retrieve cognate sets from a wordlist. """ etd = wordlist.get_etymdict(ref=ref) cognates = {} if ref == "cogids": for cogid, idxs_ in etd.items(): idxs, count = {}, 0 for idx, language in zip(idxs_, wordlist.cols): ...
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def get_actress_string(_movie, s): """Return the string of the actress names as per the naming convention specified Takes in the html contents to filter out the actress names""" a_list = get_actress_from_html(_movie, s) actress_string = '' # if javlibrary returns no actresses then we'll just say wh...
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def get_lessons_of_day(day): """ Returns the lessons as a string for the given day webelement :param day: day webelement :return: dictionary with day as key and list with lessons as value """ day_lessons = [] to_iterate = day.find_elements_by_class_name('event-content') to_iterate.reve...
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def ising_hamiltonian(n_qubits, g, h): """ Construct the hamiltonian matrix of Ising model. Args: n_qubits: int, Number of qubits g: float, Transverse magnetic field h: float, Longitudinal magnetic field """ ham_matrix = 0 # Nearest-neighbor interaction spin_coupling = ...
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import shutil def test_main( mock_building_parser, mock_return_logger, config_dict, db_connection, monkeypatch, test_dir, ): """Test main()""" def mock_parser(*args, **kwargs): parser = Namespace( cache_dir=(test_dir / "test_outputs" / "test_outputs_uniprot"), ...
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def _slots_from_params(func): """List out slot names based on the names of parameters of func Usage: __slots__ = _slots_from_signature(__init__) """ funcsig = signature(func) slots = list(funcsig.parameters) slots.remove('self') return slots
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import time import requests import re def gnd_to_wd_id(gnd_id): """ Searches for a Wikidata entry which contains the provided GND ID. Outputs the Wikidata ID (if found). --------- gnd_id : str GND ID of entity. Returns ----------- str. """ url = 'https://query....
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from typing import Optional def get_instance_category(entry) -> Optional[str]: """Determines the instance category for which the entry was submitted. If it does not match the config of any instance category, returns None. """ instance_categories = RidehailEnv.DIMACS_CONFIGS.ALL_CONFIGS ...
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def extendheader(table, fields): """ Extend header row in the given table. E.g.:: >>> import petl as etl >>> table1 = [['foo'], ... ['a', 1, True], ... ['b', 2, False]] >>> table2 = etl.extendheader(table1, ['bar', 'baz']) >>> table2 +...
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def get_teamcount(): """Get a count of teams.""" #FINISHED FOR SASO teamlist = get_list_of_teams() return len(teamlist)
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def make_adjacencyW(I, D, sigma): """Create adjacency matrix with a Gaussian kernel. Args: I (numpy array): for each vertex the ids to its nnn linked vertices + first column of identity. D (numpy array): for each data the l2 distances to its nnn linked vertices ...
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def blackbody2d(wavelengths, temperature): """ Planck function evaluated for a vector of wavelengths in units of meters and temperature in units of Kelvin Parameters ---------- wavelengths : `~numpy.ndarray` Wavelength array in units of meters temperature : `~numpy.ndarray` ...
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def bookShop(): """ Este programa resuelve el siguiente ejercicio: Book Shop Link: https://cses.fi/problemset/task/1158 Este programa retorna el máximo número de páginas que se pueden conseguir comprando libros dados el precio y páginas de los libros disponibles y la cantidad de dinero disponible. """ ...
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import mpmath def pdf(x, nu, sigma): """ PDF for the Rice distribution. """ if x <= 0: return mpmath.mp.zero with mpmath.extradps(5): x = mpmath.mpf(x) nu = mpmath.mpf(nu) sigma = mpmath.mpf(sigma) sigma2 = sigma**2 p = ((x / sigma2) * mpmath.exp(-(x...
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import typing def get_310_prob(score_prob_dct: dict) -> typing.Dict[str, float]: """get home win, draw, away win prob""" prob = {} result_dct = get_score_pairs(0) type_dict = ['home_win', 'draw', 'away_win'] for i in type_dict: prob[i] = get_one_prob(score_prob_dct, result_dct, i) s...
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def load_project_data(storage): """Load project data using provided open_func and project directory.""" # Load items and extractors from project schemas = storage.open('items.json') extractors = storage.open('extractors.json') # Load spiders and templates spider_loader = SpiderLoader(storage) ...
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import json def home(): """ Route to display home page and form to receive text from user for speech synthesis. """ form = TextToSpeechForm() # Instantiates a client client = texttospeech.TextToSpeechClient() # Get the language list voices = client.list_voices() voice_codes_list ...
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def load_c6_file(filename, is_radar): """ Loads ice scattering LUTs from a file (based on Yang et al., JAS, 2013). Parameters ---------- filename: str The name of the file storing the Mie scattering parameters is_radar: bool If True, the first LUT column is treated as the freque...
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import typing import click import copy def gwrite(document: vp.Document, output: typing.TextIO, profile: str): """ Write gcode or other ascii files for the vpype pipeline. The output format can be customized by the user heavily to an extent that you can also output most known non-gcode ascii text fil...
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def user_int(arg): """ Convert a :class:`~int` to a `USER` instruction. :param arg: Int that represents instruction arguments. :return: Fully-qualified `USER` instruction. """ return str(arg)
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def timezoneAdjuster(context, dt): """Convinience: new datetime with given timezone.""" newtz = ITimezoneFactory(context) return dt.astimezone(newtz)
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def make_adder(n): """Return a function that takes one argument k and returns k + n. >>> add_three = make_adder(3) >>> add_three(4) 7 """ def adder(k): return k + n return adder
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def IsWritable(Feature): """IsWritable(Feature) -> Writable Parameters: Feature: str Return value: Writable: ctypes.c_int""" if _at_camera_handle is not None: return _at_core_lib.AT_IsWritable(_at_camera_handle, Feature) != AT_FALSE else: raise AndorError('Andor libr...
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import torch from typing import Union from typing import Tuple def groupby_apply( keys: torch.Tensor, values: torch.Tensor, bins: int = 95, reduction: str = "mean", return_histogram: bool = False ) -> Union[torch.Tensor, Tuple[torch.Tensor, torch.Tensor]]: """ Groupby apply for torch tensors Args: ...
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def cube(x): """return x^3""" return x*x*x
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def get_candidados(vetor): """Retorna o dado dos candidatos""" lista_retorno = [] for i in vetor: lista_retorno.append(candidatos[int(i)]) return lista_retorno
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import copy def get_fmin_tree(f_df, tree): """ """ f = f_df[f_df['F4ratio']>=0].reset_index() t = copy.deepcopy(tree) i=0 for node in t.traverse(): if node.children: l = node.children[0] r = node.children[1] lleaves = l.get_leaf_names() ...
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def primes(n): """ Returns a list of primes < n """ n = int(n) sieve = [True] * n for i in np.arange(3, n ** 0.5 + 1, 2, dtype=int): if sieve[i]: sieve[i*i::2*i]=[False]*((n-i*i-1)//(2*i)+1) return [2] + [i for i in np.arange(3,n,2) if sieve[i]]
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def H_TP(Z, T, P): """ Enthalpy defined by temperature and pressure (reference state at 300 K and 1 bar) Z - array of molar composition T, P - temperature and pressure Units are specified above """ H = RP.ABFLSHdll('TP', T, P*100, Z, 2).h - RP.ABFLSHdll('TP', 300, 100, Z, 2)....
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def test_fallback_round_with_input_n_not_int(): """ Feature: JIT Fallback Description: Test round() in graph mode with input x is not int. Expectation: TypeError. """ @ms_function def foo(): x = round(10.123, 1.0) return x with pytest.raises(TypeError) as ex: foo(...
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def validate_netmask(s): """Validate that a dotted-quad ip address is a valid netmask. >>> validate_netmask('0.0.0.0') True >>> validate_netmask('128.0.0.0') True >>> validate_netmask('255.0.0.0') True >>> validate_netmask('255.255.255.255') True >>> validate_netmask(BROADCAST)...
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def translate(): """ A handler for translating given english word which about digit to chinese character Return: - `JSON` .. code-block # message = isError ? reason : "OK" # output = isError ? '' : <TRANSLATION> { message: string, output: str...
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def create_matrix_sars_overlap_between_networks(networks_summary_df, networks_dict): """ Creates matrix where element (i,j) quantifies the number of common SARS-Cov-2 partners in networks i and j divided by the total number of SARS-Cov-2 partners in both networks Args: networks_summary_df: data...
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from typing import Tuple def load_forcings_gauge_metadata(path: str) -> Tuple[float, float, float]: """ Loads gauge metadata from the header of a CAMELS-USE forcings file. Parameters ---------- path: str Path to the forcings file. Returns ------- tuple (gauge latitude...
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def transition(measure, N, **measure_args): """ A, B transition matrices for different measures measure: the type of measure legt - Legendre (translated) legs - Legendre (scaled) glagt - generalized Laguerre (translated) lagt, tlagt - previous versions of (tilted) Laguerre with slightly...
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import numpy import pandas def interpolate_coord(df, xcol, ycol, step, distcol='d'): """ Interpolates x/y coordinates along a line at a fixed distance. Parameters ---------- df : pandas.DataFrame xcol, ycol : str Labels of the columns in ``df`` containing the x- and y-coords, ...
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def oven_cook_setting_to_str(cook_setting: OvenCookSetting, units: str) -> str: """Format OvenCookSetting values nicely.""" cook_mode = cook_setting.cook_mode cook_state = cook_mode.oven_state temperature = cook_setting.temperature modifiers = [] if cook_mode.timed: modifiers.append(STA...
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def print_location(location: Location) -> str: """Render a helpful description of the location in the GraphQL Source document.""" return print_source_location( location.source, get_location(location.source, location.start) )
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def run_metrics(ground_truth, simulation, measurement_name,users=None,repos=None): """ Run all of the assigned metrics for a given measurement. Inputs: ground_truth - DataFrame of ground truth data simulation - DataFrame of simulated data measurement_name - Name of measurement corresponding to...
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def checkTrue(comment,res,update=True): """ This method is a pass-through for consistency and updating @ In, comment, string, a comment printed out if it fails @ In, res, bool, the tested value @ In, update, bool, optional, if False then don't update results counter @ Out, res, bool, True if test ...
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def compute_votes( candidates, voters, voter_id, node_degree_normalization, ): """Comptue neighbor voting for a given set of candidates and voters Arguments: candidates {np.ndarray} -- genes x cells normalized expression for candidates voters {np.ndarray} -- genes x cells norma...
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def _precompute_cache(x, y, num_classes): """Cache quantities to speed-up the computation of L2-regularized least-sq.""" # Whiten mean = jnp.mean(x, axis=0, keepdims=True) std = jnp.std(x, axis=0, keepdims=True) + 1e-5 x = (x - mean) / std # Add a constant feature for the bias, large so it's almost unregul...
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def show_user(): """Return page showing details: walks, landmarks rated, scores.""" user = User.query.filter_by(user_id=session.get('user_id')).first() ratings = user.ratings # import pdb; pdb.set_trace() walks = user.walks # for walk in walks: # origin = Landmark.query.filter(La...
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def DesignCustomSineWave(family_list, how_many_gen, amp, per, shift_h, shift_v, show=False, print_phase_mse=False, return_phases=False): """ "Grid Search" Approach: Create sine waves with unknown amp, per, shift_h and shift_v in combinatorial manner and align famili...
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def get_environment_names(): """Return a list of defined environment names, with user preference first.""" envlist = [r[0] for r in _session.query(models.Environment.name).order_by(models.Environment.name).all()] # move user preference to top of list userenvname = _config.userconfig.get("environmentnam...
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def plot(direction, speed, **kwargs): """Create a WindrosePlot, add bars and other standard things. Args: direction (pint.Quantity): wind direction from North. speed (pint.Quantity): wind speeds with units attached. **bins (pint.Quantity): wind speed bins to produce the histogram for. ...
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def convert_floor(node, **kwargs): """Map MXNet's floor operator attributes to onnx's Floor operator and return the created node. """ return create_basic_op_node('Floor', node, kwargs)
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async def get_qrcode_login_info(): """获取二维码登录信息""" url = f"{BASE_URL}qrcode/auth_code" return await post(url, reqtype="app")
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def get_global_free_state(self): """ Recurse get_global_free_state on all child parameters, and hstack them. Return: Stacked np-array for all Param except for LocalParam """ # check if the child has 'get_local_free_state' method for p in self.sorted_params: if isinstance(p, (param.Param,...
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def case_activity_update_type(): """ Case Activity Update Types: RESTful CRUD Controller """ return crud_controller()
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def dftregistration(buf1ft,buf2ft,usfac=100): """ # function [output Greg] = dftregistration(buf1ft,buf2ft,usfac); # Efficient subpixel image registration by crosscorrelation. This code # gives the same precision as the FFT upsampled cross correlation in a # small fraction of the computat...
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def parametrize_simulations(args): """Parametrize simulations""" if args.type == INSTANCE_COUNTS: return instance_count_sims(args) if args.type == FEATURE_COUNTS: return feature_count_sims(args) if args.type == NOISE_LEVELS: return noise_level_sims(args) if args.type == SHUFF...
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from typing import Union def connect(base_url: Union[str, URL], database_id: int = DJ_DATABASE_ID) -> Connection: """ Create a connection to the database. """ if not isinstance(base_url, URL): base_url = URL(base_url) return Connection(base_url, database_id)
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def micore_tf_deps(): """Dependencies for Tensorflow builds. Returns: list of dependencies which must be used by each cc_library which refers to Tensorflow. Enables the library to compile both for Android and for Linux. Use this macro instead of directly declaring dependencies on Tensor...
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def de_bruijn(k, n): """ de Bruijn sequence for alphabet k and subsequences of length n. """ try: # let's see if k can be cast to an integer; # if so, make our alphabet a list _ = int(k) alphabet = list(map(str, range(k))) except (ValueError, TypeError): ...
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def append_artist(songs, artist): """ When the songs gathered from the description just contains the titles of the songs usually means it's an artist's album. If an artist was provided appends the song title to the artist using a hyphen (artist - song) :param list songs: List of song titles (onl...
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def pose2pandas(pose: pyrosetta.Pose, scorefxn: pyrosetta.ScoreFunction) -> pd.DataFrame: """ Return a pandas dataframe from the scores of the pose :param pose: :return: """ pose.energies().clear_energies() scorefxn.weights() # neccessary? emopts = pyrosetta.rosetta.core.scoring.methods...
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def rantest(seed,N=100): """get some random numbers""" buff = np.zeros(N,dtype=np.double) ct_buff = buff.ctypes.data_as(ct.POINTER(ct.c_double)) sim.rantest(seed,N,ct_buff) return buff
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def tf_efficientnet_b0_ap(pretrained=False, **kwargs): """ EfficientNet-B0 AdvProp. Tensorflow compatible variant """ kwargs['bn_eps'] = BN_EPS_TF_DEFAULT kwargs['pad_type'] = 'same' model = _gen_efficientnet( 'tf_efficientnet_b0_ap', channel_multiplier=1.0, depth_multiplier=1.0, pretrained=pre...
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import torch def pi_del( shape, y_tgt_star, pad_symbol=0, plh_symbol=0, bos_symbol=0, eos_symbol=0, Kmax=100, device="cpu", ): """Operations and states to edit a partially deleted version of y_star back to y_star.""" # shape = B x N x M # y_tgt_star : B x M shape = list...
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from typing import Dict from typing import Any import logging def create_service_account(project_id: str, service_account_name: str, role_name: str, file_name: str) -> Dict[str, Any]: """Create a new service account. Args: project_id: GCP project id. service_account_name: The s...
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def test_ode_FE(): """Test that a linear u(t)=a*t+b is exactly reproduced.""" def exact_solution(t): return a*t + b def f(u, t): # ODE return a + (u - exact_solution(t))**m a = 4 b = -1 m = 6 dt = 0.5 T = 20.0 u, t = ode_FE(f, exact_solution(0), dt, T) diff ...
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def file_finder(): """ This function allows to the user to select a file using the dialog with tkinter. :return path_name :rtype str the string of the path_name file. """ root = Tk() root.title("File Finder") root.geometry("500x400") root.attributes("-topmost", ...
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def htm_search_cone(IndexFile_data,Long,Lat,Radius,Ind=None,Son_index=np.arange(2,6),PolesLong_index=np.arange(6,11,2),PolesLat_index=np.arange(7,12,2)): #print('I am running htm_search_cone') """Description: Search for all HTM leafs intersecting a small circles Input :-Either a table of HTM data or an...
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def get_missing_columns(missing_data): """ Returns columns names as list that containes missing data :param missing_data : return of missing_data(df) :return list: list containing columns with missing data """ missing_data = missing_data[missing_data['percent'] > 0] missing_...
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def read(request): """Render the page for a group.""" pubid = request.matchdict["pubid"] slug = request.matchdict.get("slug") group = models.Group.get_by_pubid(pubid) if group is None: raise exc.HTTPNotFound() if slug is None or slug != group.slug: url = request.route_url('grou...
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import time import copy import tqdm import torch from typing import OrderedDict def train_model( model, device, train_data_loader, valid_data_loader, criterion, optimizer, scheduler, num_epochs=5): """ training Parameters -------------- model : DogClassificationModel ...
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from src.dialogue_system.agent.agent_with_goal_3 import AgentWithGoal as AgentWithGoal3 import json import time import pickle def run(parameter): """ The entry function of this code. Args: parameter: the super-parameter """ print(json.dumps(parameter, indent=2)) time.sleep(2) slo...
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from typing import Iterable def convert( value: str, conversion_recipes: Iterable[ConversionRecipe[ConvertResultType]]) -> ConvertResultType: """ Given a string value and a series of conversion recipes, attempt to convert the value using the recipes. If none of the recipes declare the...
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def get_function_name(fcn): """Returns the fully-qualified function name for the given function. Args: fcn: a function Returns: the fully-qualified function name string, such as "eta.core.utils.function_name" """ return fcn.__module__ + "." + fcn.__name__
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def clean_cases(text): """ Makes text all lowercase. :param text: the text to be converted to all lowercase. :type: str :return: lowercase text :type: str """ return text.lower()
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def root(): """Refreshes data in database""" db.drop_all() db.create_all() # Get data from api, make objects with it, and add to db for row in df.index: db_comment = Comment(user=df.User[row],text=df.Text[row]) # rating = df.Rating[row] db.session.add(db_comment) db.sessi...
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def bond_value_to_description(value): """bond_value_to_description(value) -> string Convert from a bond type string into its text description, separated by "|"s. The result are compatible with OEGetFPBontType and are in canonical order. """ return _get_type_description("bond", _btype_flags, val...
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def read_set_from_file(filename): """ Extract a de-duped collection (set) of text from a file. Expected file format is one item per line. """ collection = set() with open(filename, 'r', encoding='utf-8') as file_: for line in file_: collection.add(line.rstrip()) return c...
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def filter_0_alleles(allele_df, allele_num=2): """Drop alleles that do not appear in any of the strains. """ drop_cols = [] for col in allele_df.columns: if allele_df[col].sum()<allele_num: drop_cols.append(col) allele_df.drop(drop_cols, inplace=True, axis=1) return allele_df
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def gradient_of_rmse(y_hat, y, Xn): """ Returns the gradient of the Root Mean Square error with respect to the parameters of the linear model that generated the prediction `y_hat'. Hence, y_hat should have been generated by a linear process of the form Xn.T.dot(theta) Args: y...
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def is_commit_in_public_upstream(revision: str, public_upstream_branch: str, source_dir: str): """ Determine if the public upstream branch includes the specified commit. :param revision: Git commit hash or reference :param public_upstream_branch: Git branch of the public upstream source :param sour...
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def align_down(x: int, align: int) -> int: """ Align integer down. :return: ``y`` such that ``y % align == 0`` and ``y <= x`` and ``(x - y) < align`` """ return x - (x % align)
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def null(): """return an empty bit buffer""" return bits()
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def find_coherent_patch(correlations, window=11): """Looks through 3d stack of correlation layers and finds strongest correlation patch Also accepts a 2D array of the pre-compute means of the 3D stack. Uses a window of size (window x window), finds the largest average patch Args: correlations ...
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def test(): """HI :)""" return 'Hi!'
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def get_vdfdx(stuff_for_time_loop, vdfdx_implementation="exponential"): """ This function enables VlaPy to choose the implementation of the vdfdx stepper to use in the lower level sections of the simulation :param stuff_for_time_loop: (dictionary) contains the derived parameters for the simulation ...
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def worker(args): """ 1. Create the envelope request object 2. Send the envelope """ envelope_args = args["envelope_args"] # 1. Create the envelope request object envelope_definition = make_envelope(envelope_args) # 2. call Envelopes::create API method # Exceptions will be caught by...
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import glob import csv def write_colocated_data_time_avg(coloc_data, fname): """ Writes the time averaged data of gates colocated with two radars Parameters ---------- coloc_data : dict dictionary containing the colocated data parameters fname : str file name where to store th...
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