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def create_user(): """ Method that will create an user . Returns: user.id: The id of the created user Raises: If an error occurs it will be displayed in a error message. """ try: new_user = User(name=login_session['username'], email=login_session[ 'emai...
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import numpy def buildStartAndEndWigData(thisbam, LOG_EVERY_N=1000, logger=None): """parses a bam file for 3' and 5' ends and builds these into wig-track data Returns a dictionary of various gathered statistics.""" def formatToWig(wigdata): """ take in the read position dat...
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from pathlib import Path from typing import List from typing import Optional def time_series_h5(timefile: Path, colnames: List[str]) -> Optional[DataFrame]: """Read temporal series HDF5 file. If :data:`colnames` is too long, it will be truncated. If it is too short, additional column names will be deduce...
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def decode_jwt(token): """decodes a token and returns ID associated (subject) if valid""" try: payload = jwt.decode(token.encode(), current_app.config['SECRET_KEY'], algorithms=['HS256']) return {"isError": False, "payload": payload["sub"]} except jwt.ExpiredSignatureError as e: curr...
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def format_point(point: Point) -> str: """Return a str representing a Point object. Args: point: Point obj to represent. Returns: A string representing the Point with ° for grades, ' for minutes and " for seconds. Latitude is written before Longitude. Example Output: 30...
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def families_horizontal_correctors(): """.""" return ['CH']
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import requests def variable_select_source_data_proxy(request): """ @summary: 获取下拉框源数据的通用接口 @param request: @return: """ url = request.GET.get('url') try: response = requests.get( url=url, verify=False ) except Exception as e: logger.exce...
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async def select_guild_lfg_events(guild_id: int) -> list[asyncpg.Record]: """Gets the lfg messages for a specific guild ordered by the youngest creation date""" select_sql = f""" SELECT id, message_id, creation_time, voice_channel_id FROM lfgmessages WHERE ...
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def ValueToString(descriptor, field_desc, value): """Renders a field value as a PHP literal. Args: descriptor: The descriptor module from the protobuf package, e.g. google.protobuf.descriptor. field_desc: The type descriptor for the field value to be rendered. value: The value of the field to b...
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def __load_txt_resource__(path): """ Loads a txt file template :param path: :return: """ txt_file = open(path, "r") return txt_file
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def parse_cpu_spec(spec): """Parse a CPU set specification. :param spec: cpu set string eg "1-4,^3,6" Each element in the list is either a single CPU number, a range of CPU numbers, or a caret followed by a CPU number to be excluded from a previous range. :returns: a set of CPU indexes ...
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import typing def distance_fit_from_transits() -> typing.List[float]: """ This uses the observers position from full transits and then the runway positions from all the transit lines fitted to a """ ((x_mean, x_std), (y_mean, y_std)) = observer_position_mean_std_from_full_transits() transits =...
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import torch def collate_fn_synthesize(batch): """ Create batch Args : batch(tuple) : List of tuples / (x, c) x : list of (T,) c : list of (T, D) Returns : Tuple of batch / Network inputs x (B, C, T), Network targets (B, T, 1) """ local_conditioning = len(batch[0]) >= 2 if local_condi...
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def max_(context, mapping, args, **kwargs): """Return the max of an iterable""" if len(args) != 1: # i18n: "max" is a keyword raise error.ParseError(_("max expects one argument")) iterable = evalwrapped(context, mapping, args[0]) try: return iterable.getmax(context, mapping) ...
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from typing import Optional from typing import Dict def dict_to_duration(time_dict: Optional[Dict[str, int]]) -> Duration: """Convert a QoS duration profile from YAML into an rclpy Duration.""" if time_dict: try: return Duration(seconds=time_dict['sec'], nanoseconds=time_dict['nsec']) ...
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def gen_ex_tracking_df(subj_dir): """Generate subject tracking error data frames from time series CSVs. This method generates tracking error (Jaccard distance, CSA, T, AR) data frames from raw time series CSV data for a single subject. Args: subj_dir (str): path to subject data directory, incl...
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def mse(y_true: np.ndarray, y_pred: np.ndarray) -> float: """Compute the MSE (Mean Squared Error).""" return sklearn.metrics.mean_squared_error(y_true, y_pred)
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import torch def policy_improvement(env, V, gamma): """ Obtain an improved policy based on the values @param env: OpenAI Gym environment @param V: policy values @param gamma: discount factor @return: the policy """ n_state = env.observation_space.n n_action = env.action_space.n ...
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def loudness_zwst_freq(spectrum, freqs, field_type="free"): """Zwicker-loudness calculation for stationary signals Calculates the acoustic loudness according to Zwicker method for stationary signals. Normatice reference: ISO 532:1975 (method B) DIN 45631:1991 ISO 532-1:2017 (met...
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def normU(u): """ A function to scale Uranium map. We don't know what this function should be """ return u
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def exact_riemann_solution(q_l, q_r, gamma=1.4, phase_plane_curves=False): """Return the exact solution to the Riemann problem with initial states q_l, q_r. The solution is given in terms of a list of states, a list of speeds (each of which may be a pair in case of a rarefaction fan), and a fu...
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def show_edge_scatter(N, s1, s2, t1, t2, d, dmax=None, fig_ax=None): """Draw the cell-edge contour and the displacement vectors. The contour is drawn using a scatter plot to color-code the displacements.""" if fig_ax is None: fig, ax = plt.subplots() else: fig, ax = fig_ax plt.f...
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def get_A2_const(alpha1, alpha2, lam_c, A1): """Function to compute the constant A2. Args: alpha1 (float): The alpha1 parameter of the WHSCM. alpha2 (float): The alpha2 parameter of the WHSCM. lam_c (float): The switching point between the two exponents of the dou...
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def _parse_seq_tf_example(example, uint8_features, shapes): """Parse tf.Example containing one or two episode steps.""" def to_feature(key, shape): if key in uint8_features: return tf.io.FixedLenSequenceFeature( shape=[], dtype=tf.string, allow_missing=True) else: return tf.io.FixedLen...
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def unique_list(a_list, unique_func=None, replace=False): """Unique a list like object. - collection: list like object - unique_func: the filter functions to return a hashable sign for unique - replace: the following replace the above with the same sign Return the unique subcollection of collectio...
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def calculate_attitude_angle(eccentricity_ratio): """Calculates the attitude angle based on the eccentricity ratio. Parameters ---------- eccentricity_ratio: float The ratio between the journal displacement, called just eccentricity, and the radial clearance. Returns ------- ...
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import torch import pickle def enc_obj2bytes(obj, max_size=4094): """ Encode Python objects to PyTorch byte tensors """ assert max_size <= MAX_SIZE_LIMIT byte_tensor = torch.zeros(max_size, dtype=torch.uint8) obj_enc = pickle.dumps(obj) obj_size = len(obj_enc) if obj_size > max_size: ...
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def featCompression (feats, deltas, deltas2): """ Returns augmented feature vectors for all cases. """ feats_total = np.zeros (78) for i in range (len (feats)): row_total = np.array ([]) feat_mean = np.mean (np.array (feats[i]), axis = 0) delt_mean = np.mean (np.array (deltas...
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def _array_indexing(array, key, key_dtype, axis): """Index an array or scipy.sparse consistently across NumPy version.""" if np_version < parse_version('1.12') or issparse(array): # Remove the check for NumPy when using >= 1.12 # check if we have an boolean array-likes to make the proper indexin...
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import torch def test_binary(test_data, model, criterion, batch_size, device, generate_batch=None): """Calculate performance of a Pytorch binary classification model Parameters ---------- test_data : torch.utils.data.Dataset Pytorch dataset model: torch.nn.Module Pytorch Model ...
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def linear_imputer(y, missing_values=np.nan, copy=True): """ Replace missing values in y with values from a linear interpolation on their position in the array. Parameters ---------- y: list or `numpy.array` missing_values: number, string, np.nan or None, default=`np.nan` The placeholder...
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def gap2d_cx(cx): """Accumulates complexity of gap2d into cx = (h, w, flops, params, acts).""" cx["h"] = 1 cx["w"] = 1 return cx
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import requests def test_is_not_healthy(requests_mock): """ Test is not healthy response """ metadata = Gen3Metadata("https://example.com") def _mock_request(url, **kwargs): assert url.endswith("/_status") mocked_response = MagicMock(requests.Response) mocked_response.sta...
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def kernelTrans(X, A, kTup): """ 通过核函数将数据转换更高维的空间 Parameters: X - 数据矩阵 A - 单个数据的向量 kTup - 包含核函数信息的元组 Returns: K - 计算的核K """ m,n = np.shape(X) K = np.mat(np.zeros((m,1))) if kTup[0] == 'lin': K = X * A.T #线性核函数,只进行内积。 elif kTup[0] == 'rbf': #高斯核函数,根据高斯核函数公式进行计算 for j in range(m): ...
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def getBusEquipmentData(bhnd,paraCode): """ Retrieves the handle of all equipment of a given type (paraCode) that is attached to bus []. Args : bhnd : [bus handle] nParaCode : code data (BR_nHandle,GE_nBusHnd...) Returns: [][] = [len(bhnd)] [len(all equ...
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from typing import List from typing import Counter import click def build_and_register( client: "prefect.Client", flows: "List[FlowLike]", project_id: str, labels: List[str] = None, force: bool = False, ) -> Counter: """Build and register all flows. Args: - client (prefect.Client)...
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def creer_element_xml(nom_elem,params): """ Créer un élément de la relation qui va donner un des attributs. Par exemple, pour ajouter le code FANTOIR pour une relation, il faut que le code XML soit <tag k='ref:FR:FANTOIR' v='9300500058T' />" Pour cela, il faut le nom de l'élément (ici tag) et un diction...
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def get_display(): """Getter function for the display keys Returns: list: list of dictionary keys """ return data.keys()
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def calculate_class_probabilities(summaries, row) -> dict(): """ Calculate the probability of a value using the Gaussian Probability Density Function from inputs: summaries: prepared summaries of dataset row: a row in the dataset for predicting its label (a row of X_test) This function uses th...
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from typing import Sequence from typing import Any def find(sequence: Sequence, target_element: Any) -> int: """Find the index of the first occurrence of target_element in sequence. Args: sequence: A sequence which to search through target_element: An element to search in the sequence Re...
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def read_time_data(fname, unit): """ Read time data (csv) from file and load into Numpy array """ data = np.loadtxt(fname, delimiter=',') t = data[:,0] x = data[:,1]*unit f = interp1d(t, x, kind='linear', bounds_error=False, fill_value=x[0]) return f
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from pathlib import Path from typing import List from typing import Dict import json def read_nli_data(p: Path) -> List[Dict]: """Read dataset which has been converted to nli form""" with open(p) as f: data = json.load(f) return data
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def stanley_control(state, cx, cy, cyaw, last_target_idx): """ Stanley steering control. :param state: (State object) :param cx: ([float]) :param cy: ([float]) :param cyaw: ([float]) :param last_target_idx: (int) :return: (float, int) """ current_target_idx, error_front_axle = c...
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def get_predictions(my_map, reviews, restaurants): """ Get the topic predictions for all restaurants. Parameters: my_map - the Map object representation of the current city reviews - a dictionary of reviews with restaurant ids for keys restaurants - a list of restaurants of the curr...
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def decode_token(token, secret_key): """ 解密websocket token :param token: :param secret_key: :return: """ info = jwt.decode(token, secret_key, algorithms=['HS256']) return info
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import requests def getPatternID(pattern_url): """asssumes pattern_url is a string, representing the URL of a ravelry pattern e.g.https://www.ravelry.com/patterns/library/velvet-cache-cou returns an int, the pattern ID """ permalink = pattern_url[41:] with requests.Session() as a_session: ...
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def make_multibonacci_modulo(history_length, limit): """Creates a function that generates the Multibonacci sequence modulo n.""" def sequence_fn(seq): return np.sum(seq[-history_length:]) % limit return sequence_fn
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def _get_key(arguments): """ Determine the config key based on the arguments. :param arguments: A dictionary of arguments already processed through this file's docstring with docopt :return: The datastore path for the config key. """ # Get the base path. if arguments.get("felix"): ...
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def prepare_data_from_stooq(df, to_prediction = False, return_days = 5): """ Prepares data for X, y format from pandas dataframe downloaded from stooq. Y is created as closing price in return_days - opening price Keyword arguments: df -- data frame contaning data from stooq return_days -- nu...
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def represents_int_above_0(s: str) -> bool: """Returns value evaluating if a string is an integer > 0. Args: s: A string to check if it wil be a float. Returns: True if it converts to float, False otherwise. """ try: val = int(s) if val > 0: return True...
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def resnet18(pretrained=False, **kwargs): """Constructs a ResNet-18 model. Args: pretrained (bool): If True, returns a model pre-trained on ImageNet """ model = ResNet(BasicBlock, [2, 2, 2, 2], **kwargs) if pretrained: model.load_state_dict(model_zoo.load_url('https://download.pytor...
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def sydney(): """Import most recent Sydney dataset""" d = { 'zip':'Sydney_geol_100k_shape', 'snap':-1, } return(d)
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def format_non_date(value): """Return non-date value as string.""" return_value = None if value: return_value = value return return_value
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def get_loss(loss_str): """Get loss type from config""" def _get_one_loss(cur_loss_str): if hasattr(keras_losses, cur_loss_str): loss_cls = getattr(keras_losses, cur_loss_str) elif hasattr(custom_losses, cur_loss_str): loss_cls = getattr(custom_losses, cur_loss_str) ...
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from functools import cmp_to_key def _hashable_policy(policy, policy_list): """ Takes a policy and returns a list, the contents of which are all hashable and sorted. Example input policy: {'Version': '2012-10-17', 'Statement': [{'Action': 's3:PutObjectAcl', ...
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def LF_CD_NO_VERB(c): """ This label function is designed to fire if a given sentence doesn't contain a verb. Helps cut out some of the titles hidden in Pubtator abstracts """ if len([x for x in nltk.pos_tag(word_tokenize(c.get_parent().text)) if "VB" in x[1]]) == 0: if "correlates with...
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from typing import Tuple def has_file_allowed_extension(filename: PATH_TYPE, extensions: Tuple[str, ...]) -> bool: """Checks if a file is an allowed extension. Args: filename (string): path to a file extensions (tuple of strings): extensions to consider (lowercase) Returns: bool:...
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def get_account_html(netid, timestamp=None): """ The Libraries object has a method for getting information about a user's library account """ return _get_resource(netid, timestamp=timestamp, style='html')
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import functools import math def gcd_multiple(*args) -> int: """Return greatest common divisor of integers in args""" return functools.reduce(math.gcd, args)
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from typing import Counter def chars_to_family(chars): """Takes a list of characters and constructs a family from them. So, A1B2 would be created from ['B', 'A', 'B'] for example.""" counter = Counter(chars) return "".join(sorted([char + str(n) for char, n in counter.items()]))
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import configparser def get_config_properties(config_file="config.properties", sections_to_fetch = None): """ Returns the list of properties as a dict of key/value pairs in the file config.properties. :param config_file: filename (string). :param section: name of section to fetch properties from (if s...
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import base64 import secrets import time def process_speke(): """Processes an incoming request from MediaLive, which is using SPEKE A key is created and stored in DynamoDB.""" input_request = request.get_data() # Parse request tree = ET.fromstring(input_request) content_id = tree.get("id") ...
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from typing import Dict def merge(source: Dict, destination: Dict) -> Dict: """ Deep merge two dictionaries Parameters ---------- source: Dict[Any, Any] Dictionary to merge from destination: Dict[Any, Any] Dictionary to merge to Returns ------- Dict[Any, Any] ...
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async def async_api_adjust_volume_step(hass, config, directive, context): """Process an adjust volume step request.""" # media_player volume up/down service does not support specifying steps # each component handles it differently e.g. via config. # For now we use the volumeSteps returned to figure out ...
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import warnings import io def load_img(path, grayscale=False, color_mode='rgb', target_size=None, interpolation='nearest'): """Loads an image into PIL format. # Arguments path: Path to image file. grayscale: DEPRECATED use `color_mode="grayscale"`. color_mode: The desired ...
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import logging import platform def check_compatible_system_and_kernel_and_prepare_profile(args): """ Checks if we can do local profiling, that for now is only available via Linux based platforms and kernel versions >=4.9 Args: args: """ res = True logging.info("Enabled profilers: {...
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import logging import time import re def recv_bgpmon_updates(host, port, queue): """ Receive and parse the BGP update XML stream of bgpmon """ logging.info ("CALL recv_bgpmon_updates (%s:%d)", host, port) # open connection sock = _init_bgpmon_sock(host,port) data = "" stream = "" #...
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import ast def is_string_expr(expr: ast.AST) -> bool: """Check that the expression is a string literal.""" return ( isinstance(expr, ast.Expr) and isinstance(expr.value, ast.Constant) and isinstance(expr.value.value, str) )
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import numba def events_to_img( xs: np.ndarray, ys: np.ndarray, tots: np.ndarray, cluster_ids: np.ndarray, x_img: np.ndarray, y_img: np.ndarray, minimum_event_num: int = 30, extinguish_dist: float = 1.41422, # sqrt(2) = 1.41421356237 ) -> np.ndarray: ...
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def generate_ar(n_series, n_samples, random_state=0): """Generate a linear auto-regressive series. This simple model is defined as:: X(t) = 0.4 * X(t - 1) - 0.6 * X(t - 4) + 0.5 * N(0, 1) The task is to predict the current value using all the previous values. Parameters ---------- n_...
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import re def get_raw_code(file_path): """ Removes empty lines, leading and trailing whitespaces, single and multi line comments :param file_path: path to .java file :return: list with raw code """ raw_code = [] multi_line_comment = False with open(file_path, "r") as f: for ro...
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from typing import Pattern import re def _yaml_comment_regex() -> Pattern: """ From https://yaml-multiline.info/, it states that `#` cannot appear *after* a space or a newline, otherwise it will be a syntax error (for multiline strings that don't use a block scalar). This applies to single lines as we...
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def to_list(name: str) -> "Expr": """ Aggregate to list """ return col(name).list()
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import re def format_ipc_dimension(number: float, decimal_places: int = 2) -> str: """ Format a dimension (e.g. lead span or height) according to IPC rules. """ formatted = '{:.2f}'.format(number) stripped = re.sub(r'^0\.', '', formatted) return stripped.replace('.', '')
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def mean_test(data, muy0, alternative = 'equal', alpha = 0.95): """ This function is used to create a confidence interval of two.sided hypothesis Input: data (1D array): the sample of the whole column that you want to evaluate confidence (float) : confidence_level, must be in...
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def __build_command(command, name, background=None, enable=None): """ Constuct args for systemctl command. Args: command: The systemctl command name: The unit name or name pattern background: True to have systemctl perform the command in the background enable: True to enable/disable, False to start...
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import requests def dockerFetchLatestVersion(image_name: str) -> list[str]: """ Fetches the latest version of a docker image from hub.docker.com :param image_name: image to search for :return: list of version suggestions for the image or 'not found' if error was returned """ base_url = "https:...
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import torch import torchvision def _dataset( dataset_type: str, transform: str, train: bool = True ) -> torch.utils.data.Dataset: """ Dataset: mnist: MNIST cifar10: CIFAR-10 cifar100: CIFAR-100 Transform: default: the default transform for each data set simclr: the tran...
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def inferCustomerClasses(param_file, evidence_dir, year): """ This function uses the variable elimination algorithm from libpgm to infer the customer class of each AnswerID, given the evidence presented in the socio-demographic survey responses. It returns a tuple of the dataframe with the probability...
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def MidiSegInfo(segment): """ Midi file info saved in config file for speed """ class segInfo: iMsPerTick = 0 bpm = 4 ppqn = 480 total_ticks = 0 iLengthInMs = 0 iTracks = 0 trackList = [] ver = "1.5" ret = segInfo() savedVer = IniGetValue(...
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def num_in_row(board, row, num): """True if num is already in the row, False otherwise""" return num in board[row]
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import urllib def load_mnist(dataset="mnist.pkl.gz"): """ dataset: string, the path to dataset (MNIST) """ data_dir, data_file = os.path.split(dataset) # download MNIST if not found if not os.path.isfile(dataset): origin = ( 'http://www.iro.umontreal.ca/~lisa/deep/...
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def factorial_3(n, acc=1): """ Replace all recursive tail calls f(x=x1, y=y1, ...) with (x, y, ...) = (x1, y1, ...); continue """ while True: if n < 2: return 1 * acc (n, acc) = (n - 1, acc * n) continue break
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def autocorr(x, axis=0, fast=False): """ Estimate the autocorrelation function of a time series using the FFT. :param x: The time series. If multidimensional, set the time axis using the ``axis`` keyword argument and the function will be computed for every other axis. :param ax...
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import re import dateutil def parse_date(filename_html): """Parse a file, and return the date associated with it. filename_html -- Name of file to parse. """ match = re.search(r"\d{4}-\d{2}-\d{2}", filename_html) if not match: return None match_date = match.group() file_...
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def mod(a1, a2): """ Function to give the remainder """ return a1 % a2
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def select_theme_dirs(): """ Load theme templates, if applicable """ if settings.THEME_DIR: return ["themes/" + settings.THEME_DIR + "/templates", "templates"] else: return ["templates"]
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def encode_string(s): """ Simple utility function to make sure a string is proper to be used in a SQL query EXAMPLE: That's my boy! -> N'That''s my boy!' """ res = "N'"+s.replace("'","''")+"'" res = res.replace("\\''","''") res = res.replace("\''","''") return res
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def email_manage(request, email_pk, action): """Set the requested email address as the primary. Can only be requested by the owner of the email address.""" email_address = get_object_or_404(EmailAddress, pk=email_pk) if not email_address.user == request.user and not request.user.is_staff: messag...
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def get_container_service_api_version(): """Get zun-api-version with format: 'container X.Y'""" return 'container ' + CONTAINER_SERVICE_MICROVERSION
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from django.utils.cache import get_cache_key from django.core.cache import cache def invalidate_view_cache(view_name, args=[], namespace=None, key_prefix=None): """ This function allows you to invalidate any view-level cache. view_name: view function you wish to invalidate or it's named url pattern ...
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def compute_ray_features_segm_2d(seg_binary, position, angle_step=5., smooth_coef=0, edge='up'): """ compute ray features vector , shift them to be starting from larges and smooth_coef them by gauss filter (from given point the close distance to boundary) :param ndarray seg_binary: np.array<height, wid...
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def visualize_bbox(img, bbox, class_name, color=(255, 0, 0) , thickness=2): """Visualizes a single bounding box on the image""" BOX_COLOR = (255, 0, 0) # Red TEXT_COLOR = (255, 255, 255) # White x_min, y_min, x_max, y_max = bbox cv2.rectangle(img, (x_min, y_min), (x_max, y_max), color=color, thick...
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import json def mock_light(): """Mock UniFi Protect Camera device.""" data = json.loads(load_fixture("sample_light.json", integration=DOMAIN)) return Light.from_unifi_dict(**data)
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def randomize_bulge_i(N, M, bp='G', target='none', ligand='theo'): """ Replace the upper stem with the aptamer and randomize the bulge to connect it to the lower stem. This is a variant of the rb library with two small differences. First, the nucleotides flanking the aptamer are not randomized a...
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import logging def parse_identifier(db, identifier): """Parse the identifier and return an Identifier object representing it. :param db: Database session :type db: sqlalchemy.orm.session.Session :param identifier: String containing the identifier :type identifier: str :return: Identifier ob...
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import textwrap def wrap_name(dirname, figsize): """Wrap name to fit in subfig.""" fontsize = plt.rcParams["font.size"] # 1/120 = inches/(fontsize*character) num_chars = int(figsize / fontsize * 72) return textwrap.fill(dirname, num_chars)
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def resolve_shape(tensor, rank=None, scope=None): """Fully resolves the shape of a Tensor. Use as much as possible the shape components already known during graph creation and resolve the remaining ones during runtime. Args: tensor: Input tensor whose shape we query. rank: The rank of the tensor, provi...
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def gradient_clip(gradients, max_gradient_norm): """Clipping gradients of a model.""" clipped_gradients, gradient_norm = tf.clip_by_global_norm( gradients, max_gradient_norm) gradient_norm_summary = [tf.summary.scalar("grad_norm", gradient_norm)] gradient_norm_summary.append( tf.summary.scalar("clip...
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def list_species(category_id): """ List all the species for the specified category :return: A list of Species instances """ with Session.begin() as session: species = session.query(Species)\ .filter(Species.categoryId == category_id)\ .order_by(db.asc(Species.name))\...
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