body stringlengths 26 98.2k | body_hash int64 -9,222,864,604,528,158,000 9,221,803,474B | docstring stringlengths 1 16.8k | path stringlengths 5 230 | name stringlengths 1 96 | repository_name stringlengths 7 89 | lang stringclasses 1
value | body_without_docstring stringlengths 20 98.2k |
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@read_session
def list_bad_replicas_history(limit=10000, thread=None, total_threads=None, session=None):
'\n List the bad file replicas history. Method only used by necromancer\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this necromancer.\n :param ... | 270,415,974,295,745,380 | List the bad file replicas history. Method only used by necromancer
:param limit: The maximum number of replicas returned.
:param thread: The assigned thread for this necromancer.
:param total_threads: The total number of threads of all necromancers.
:param session: The database session in use. | lib/rucio/core/replica.py | list_bad_replicas_history | bari12/rucio | python | @read_session
def list_bad_replicas_history(limit=10000, thread=None, total_threads=None, session=None):
'\n List the bad file replicas history. Method only used by necromancer\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this necromancer.\n :param ... |
@transactional_session
def update_bad_replicas_history(dids, rse_id, session=None):
'\n Update the bad file replicas history. Method only used by necromancer\n\n :param dids: The list of DIDs.\n :param rse_id: The rse_id.\n :param session: The database session in use.\n '
for did in dids:
... | -5,265,296,215,497,797,000 | Update the bad file replicas history. Method only used by necromancer
:param dids: The list of DIDs.
:param rse_id: The rse_id.
:param session: The database session in use. | lib/rucio/core/replica.py | update_bad_replicas_history | bari12/rucio | python | @transactional_session
def update_bad_replicas_history(dids, rse_id, session=None):
'\n Update the bad file replicas history. Method only used by necromancer\n\n :param dids: The list of DIDs.\n :param rse_id: The rse_id.\n :param session: The database session in use.\n '
for did in dids:
... |
@transactional_session
def __declare_bad_file_replicas(pfns, rse_id, reason, issuer, status=BadFilesStatus.BAD, scheme='srm', session=None):
'\n Declare a list of bad replicas.\n\n :param pfns: The list of PFNs.\n :param rse_id: The RSE id.\n :param reason: The reason of the loss.\n :param issuer: Th... | -9,121,332,924,852,603,000 | Declare a list of bad replicas.
:param pfns: The list of PFNs.
:param rse_id: The RSE id.
:param reason: The reason of the loss.
:param issuer: The issuer account.
:param status: Either BAD or SUSPICIOUS.
:param scheme: The scheme of the PFNs.
:param session: The database session in use. | lib/rucio/core/replica.py | __declare_bad_file_replicas | bari12/rucio | python | @transactional_session
def __declare_bad_file_replicas(pfns, rse_id, reason, issuer, status=BadFilesStatus.BAD, scheme='srm', session=None):
'\n Declare a list of bad replicas.\n\n :param pfns: The list of PFNs.\n :param rse_id: The RSE id.\n :param reason: The reason of the loss.\n :param issuer: Th... |
@transactional_session
def add_bad_dids(dids, rse_id, reason, issuer, state=BadFilesStatus.BAD, session=None):
'\n Declare a list of bad replicas.\n\n :param dids: The list of DIDs.\n :param rse_id: The RSE id.\n :param reason: The reason of the loss.\n :param issuer: The issuer account.\n :param ... | -7,335,185,593,077,941,000 | Declare a list of bad replicas.
:param dids: The list of DIDs.
:param rse_id: The RSE id.
:param reason: The reason of the loss.
:param issuer: The issuer account.
:param state: BadFilesStatus.BAD
:param session: The database session in use. | lib/rucio/core/replica.py | add_bad_dids | bari12/rucio | python | @transactional_session
def add_bad_dids(dids, rse_id, reason, issuer, state=BadFilesStatus.BAD, session=None):
'\n Declare a list of bad replicas.\n\n :param dids: The list of DIDs.\n :param rse_id: The RSE id.\n :param reason: The reason of the loss.\n :param issuer: The issuer account.\n :param ... |
@transactional_session
def declare_bad_file_replicas(pfns, reason, issuer, status=BadFilesStatus.BAD, session=None):
'\n Declare a list of bad replicas.\n\n :param pfns: The list of PFNs.\n :param reason: The reason of the loss.\n :param issuer: The issuer account.\n :param status: The status of the ... | -8,094,433,688,527,944,000 | Declare a list of bad replicas.
:param pfns: The list of PFNs.
:param reason: The reason of the loss.
:param issuer: The issuer account.
:param status: The status of the file (SUSPICIOUS or BAD).
:param session: The database session in use. | lib/rucio/core/replica.py | declare_bad_file_replicas | bari12/rucio | python | @transactional_session
def declare_bad_file_replicas(pfns, reason, issuer, status=BadFilesStatus.BAD, session=None):
'\n Declare a list of bad replicas.\n\n :param pfns: The list of PFNs.\n :param reason: The reason of the loss.\n :param issuer: The issuer account.\n :param status: The status of the ... |
@read_session
def get_pfn_to_rse(pfns, vo='def', session=None):
"\n Get the RSE associated to a list of PFNs.\n\n :param pfns: The list of pfn.\n :param vo: The VO to find RSEs at.\n :param session: The database session in use.\n\n :returns: a tuple : scheme, {rse1 : [pfn1, pfn2, ...], rse2: [pfn3, p... | 8,781,953,538,096,400,000 | Get the RSE associated to a list of PFNs.
:param pfns: The list of pfn.
:param vo: The VO to find RSEs at.
:param session: The database session in use.
:returns: a tuple : scheme, {rse1 : [pfn1, pfn2, ...], rse2: [pfn3, pfn4, ...]}, {'unknown': [pfn5, pfn6, ...]}. | lib/rucio/core/replica.py | get_pfn_to_rse | bari12/rucio | python | @read_session
def get_pfn_to_rse(pfns, vo='def', session=None):
"\n Get the RSE associated to a list of PFNs.\n\n :param pfns: The list of pfn.\n :param vo: The VO to find RSEs at.\n :param session: The database session in use.\n\n :returns: a tuple : scheme, {rse1 : [pfn1, pfn2, ...], rse2: [pfn3, p... |
@read_session
def list_bad_replicas(limit=10000, thread=None, total_threads=None, session=None):
"\n List RSE File replicas with no locks.\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this necromancer.\n :param total_threads: The total number of thr... | 7,562,381,061,718,328,000 | List RSE File replicas with no locks.
:param limit: The maximum number of replicas returned.
:param thread: The assigned thread for this necromancer.
:param total_threads: The total number of threads of all necromancers.
:param session: The database session in use.
:returns: a list of dictionary {'scope' scope, 'name... | lib/rucio/core/replica.py | list_bad_replicas | bari12/rucio | python | @read_session
def list_bad_replicas(limit=10000, thread=None, total_threads=None, session=None):
"\n List RSE File replicas with no locks.\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this necromancer.\n :param total_threads: The total number of thr... |
@stream_session
def get_did_from_pfns(pfns, rse_id=None, vo='def', session=None):
"\n Get the DIDs associated to a PFN on one given RSE\n\n :param pfns: The list of PFNs.\n :param rse_id: The RSE id.\n :param vo: The VO to get DIDs from.\n :param session: The database session in use.\n :returns: A... | 5,691,291,921,351,244,000 | Get the DIDs associated to a PFN on one given RSE
:param pfns: The list of PFNs.
:param rse_id: The RSE id.
:param vo: The VO to get DIDs from.
:param session: The database session in use.
:returns: A dictionary {pfn: {'scope': scope, 'name': name}} | lib/rucio/core/replica.py | get_did_from_pfns | bari12/rucio | python | @stream_session
def get_did_from_pfns(pfns, rse_id=None, vo='def', session=None):
"\n Get the DIDs associated to a PFN on one given RSE\n\n :param pfns: The list of PFNs.\n :param rse_id: The RSE id.\n :param vo: The VO to get DIDs from.\n :param session: The database session in use.\n :returns: A... |
def _resolve_dids(dids, unavailable, ignore_availability, all_states, resolve_archives, session):
"\n Resolve list of DIDs into a list of conditions.\n\n :param dids: The list of data identifiers (DIDs).\n :param unavailable: (deprecated) Also include unavailable replicas in the list.\n :param ignore_av... | 8,015,680,666,655,023,000 | Resolve list of DIDs into a list of conditions.
:param dids: The list of data identifiers (DIDs).
:param unavailable: (deprecated) Also include unavailable replicas in the list.
:param ignore_availability: Ignore the RSE blocklisting.
:param all_states: Return all replicas whatever state they are in. Adds an extra 'st... | lib/rucio/core/replica.py | _resolve_dids | bari12/rucio | python | def _resolve_dids(dids, unavailable, ignore_availability, all_states, resolve_archives, session):
"\n Resolve list of DIDs into a list of conditions.\n\n :param dids: The list of data identifiers (DIDs).\n :param unavailable: (deprecated) Also include unavailable replicas in the list.\n :param ignore_av... |
def _pick_n_random(nrandom, generator):
'\n Select n random elements from the generator\n '
if (not nrandom):
(yield from generator)
return
selected = []
i = 0
iterator = iter(generator)
try:
for _ in range(nrandom):
selected.append(next(iterator))
... | 9,044,595,939,997,208,000 | Select n random elements from the generator | lib/rucio/core/replica.py | _pick_n_random | bari12/rucio | python | def _pick_n_random(nrandom, generator):
'\n \n '
if (not nrandom):
(yield from generator)
return
selected = []
i = 0
iterator = iter(generator)
try:
for _ in range(nrandom):
selected.append(next(iterator))
i += 1
while True:
... |
def _list_replicas_for_datasets(dataset_clause, state_clause, rse_clause, ignore_availability, updated_after, session):
'\n List file replicas for a list of datasets.\n\n :param session: The database session in use.\n '
if (not dataset_clause):
return
replica_query = session.query(models.Da... | 4,717,627,223,720,227,000 | List file replicas for a list of datasets.
:param session: The database session in use. | lib/rucio/core/replica.py | _list_replicas_for_datasets | bari12/rucio | python | def _list_replicas_for_datasets(dataset_clause, state_clause, rse_clause, ignore_availability, updated_after, session):
'\n List file replicas for a list of datasets.\n\n :param session: The database session in use.\n '
if (not dataset_clause):
return
replica_query = session.query(models.Da... |
def _list_replicas_for_constituents(constituent_clause, state_clause, files_wo_replica, rse_clause, ignore_availability, updated_after, session):
'\n List file replicas for archive constituents.\n '
if (not constituent_clause):
return
constituent_query = session.query(models.ConstituentAssocia... | 1,421,381,160,717,762,800 | List file replicas for archive constituents. | lib/rucio/core/replica.py | _list_replicas_for_constituents | bari12/rucio | python | def _list_replicas_for_constituents(constituent_clause, state_clause, files_wo_replica, rse_clause, ignore_availability, updated_after, session):
'\n \n '
if (not constituent_clause):
return
constituent_query = session.query(models.ConstituentAssociation.child_scope, models.ConstituentAssociat... |
def _list_replicas_for_files(file_clause, state_clause, files_wo_replica, rse_clause, ignore_availability, updated_after, session):
'\n List file replicas for a list of files.\n\n :param session: The database session in use.\n '
if (not file_clause):
return
for replica_condition in chunks(f... | -8,911,362,273,277,100,000 | List file replicas for a list of files.
:param session: The database session in use. | lib/rucio/core/replica.py | _list_replicas_for_files | bari12/rucio | python | def _list_replicas_for_files(file_clause, state_clause, files_wo_replica, rse_clause, ignore_availability, updated_after, session):
'\n List file replicas for a list of files.\n\n :param session: The database session in use.\n '
if (not file_clause):
return
for replica_condition in chunks(f... |
def get_vp_endpoint():
"\n VP endpoint is the Virtual Placement server.\n Once VP is integrated in Rucio it won't be needed.\n "
vp_endpoint = config_get('virtual_placement', 'vp_endpoint', default='')
return vp_endpoint | -4,848,187,607,751,366,000 | VP endpoint is the Virtual Placement server.
Once VP is integrated in Rucio it won't be needed. | lib/rucio/core/replica.py | get_vp_endpoint | bari12/rucio | python | def get_vp_endpoint():
"\n VP endpoint is the Virtual Placement server.\n Once VP is integrated in Rucio it won't be needed.\n "
vp_endpoint = config_get('virtual_placement', 'vp_endpoint', default=)
return vp_endpoint |
def get_multi_cache_prefix(cache_site, filename, logger=logging.log):
'\n for a givent cache site and filename, return address of the cache node that\n should be prefixed.\n\n :param cache_site: Cache site\n :param filename: Filename\n '
vp_endpoint = get_vp_endpoint()
if (not vp_endpoint):
... | -6,507,303,531,448,083,000 | for a givent cache site and filename, return address of the cache node that
should be prefixed.
:param cache_site: Cache site
:param filename: Filename | lib/rucio/core/replica.py | get_multi_cache_prefix | bari12/rucio | python | def get_multi_cache_prefix(cache_site, filename, logger=logging.log):
'\n for a givent cache site and filename, return address of the cache node that\n should be prefixed.\n\n :param cache_site: Cache site\n :param filename: Filename\n '
vp_endpoint = get_vp_endpoint()
if (not vp_endpoint):
... |
@stream_session
def list_replicas(dids, schemes=None, unavailable=False, request_id=None, ignore_availability=True, all_states=False, pfns=True, rse_expression=None, client_location=None, domain=None, sign_urls=False, signature_lifetime=None, resolve_archives=True, resolve_parents=False, nrandom=None, updated_after=Non... | -3,264,574,774,412,415,500 | List file replicas for a list of data identifiers (DIDs).
:param dids: The list of data identifiers (DIDs).
:param schemes: A list of schemes to filter the replicas. (e.g. file, http, ...)
:param unavailable: (deprecated) Also include unavailable replicas in the list.
:param request_id: ID associated with the request ... | lib/rucio/core/replica.py | list_replicas | bari12/rucio | python | @stream_session
def list_replicas(dids, schemes=None, unavailable=False, request_id=None, ignore_availability=True, all_states=False, pfns=True, rse_expression=None, client_location=None, domain=None, sign_urls=False, signature_lifetime=None, resolve_archives=True, resolve_parents=False, nrandom=None, updated_after=Non... |
@transactional_session
def __bulk_add_new_file_dids(files, account, dataset_meta=None, session=None):
'\n Bulk add new dids.\n\n :param dids: the list of new files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
for file ... | 1,837,834,521,056,973,800 | Bulk add new dids.
:param dids: the list of new files.
:param account: The account owner.
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | __bulk_add_new_file_dids | bari12/rucio | python | @transactional_session
def __bulk_add_new_file_dids(files, account, dataset_meta=None, session=None):
'\n Bulk add new dids.\n\n :param dids: the list of new files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
for file ... |
@transactional_session
def __bulk_add_file_dids(files, account, dataset_meta=None, session=None):
'\n Bulk add new dids.\n\n :param dids: the list of files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
condition = []
... | -8,821,624,138,230,299,000 | Bulk add new dids.
:param dids: the list of files.
:param account: The account owner.
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | __bulk_add_file_dids | bari12/rucio | python | @transactional_session
def __bulk_add_file_dids(files, account, dataset_meta=None, session=None):
'\n Bulk add new dids.\n\n :param dids: the list of files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
condition = []
... |
@transactional_session
def __bulk_add_replicas(rse_id, files, account, session=None):
'\n Bulk add new dids.\n\n :param rse_id: the RSE id.\n :param dids: the list of files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
... | 5,013,684,583,000,202,000 | Bulk add new dids.
:param rse_id: the RSE id.
:param dids: the list of files.
:param account: The account owner.
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | __bulk_add_replicas | bari12/rucio | python | @transactional_session
def __bulk_add_replicas(rse_id, files, account, session=None):
'\n Bulk add new dids.\n\n :param rse_id: the RSE id.\n :param dids: the list of files.\n :param account: The account owner.\n :param session: The database session in use.\n :returns: True is successful.\n '
... |
@transactional_session
def add_replicas(rse_id, files, account, ignore_availability=True, dataset_meta=None, session=None):
'\n Bulk add file replicas.\n\n :param rse_id: The RSE id.\n :param files: The list of files.\n :param account: The account owner.\n :param ignore_availability: Ignore the RS... | -7,440,819,356,795,058,000 | Bulk add file replicas.
:param rse_id: The RSE id.
:param files: The list of files.
:param account: The account owner.
:param ignore_availability: Ignore the RSE blocklisting.
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | add_replicas | bari12/rucio | python | @transactional_session
def add_replicas(rse_id, files, account, ignore_availability=True, dataset_meta=None, session=None):
'\n Bulk add file replicas.\n\n :param rse_id: The RSE id.\n :param files: The list of files.\n :param account: The account owner.\n :param ignore_availability: Ignore the RS... |
@transactional_session
def add_replica(rse_id, scope, name, bytes, account, adler32=None, md5=None, dsn=None, pfn=None, meta=None, rules=[], tombstone=None, session=None):
"\n Add File replica.\n\n :param rse_id: the rse id.\n :param scope: the scope name.\n :param name: The data identifier name.\n :... | -2,775,978,389,477,913,600 | Add File replica.
:param rse_id: the rse id.
:param scope: the scope name.
:param name: The data identifier name.
:param bytes: the size of the file.
:param account: The account owner.
:param md5: The md5 checksum.
:param adler32: The adler32 checksum.
:param pfn: Physical file name (for nondeterministic rse).
:param ... | lib/rucio/core/replica.py | add_replica | bari12/rucio | python | @transactional_session
def add_replica(rse_id, scope, name, bytes, account, adler32=None, md5=None, dsn=None, pfn=None, meta=None, rules=[], tombstone=None, session=None):
"\n Add File replica.\n\n :param rse_id: the rse id.\n :param scope: the scope name.\n :param name: The data identifier name.\n :... |
@transactional_session
def delete_replicas(rse_id, files, ignore_availability=True, session=None):
'\n Delete file replicas.\n\n :param rse_id: the rse id.\n :param files: the list of files to delete.\n :param ignore_availability: Ignore the RSE blocklisting.\n :param session: The database session in... | -6,768,273,747,281,366,000 | Delete file replicas.
:param rse_id: the rse id.
:param files: the list of files to delete.
:param ignore_availability: Ignore the RSE blocklisting.
:param session: The database session in use. | lib/rucio/core/replica.py | delete_replicas | bari12/rucio | python | @transactional_session
def delete_replicas(rse_id, files, ignore_availability=True, session=None):
'\n Delete file replicas.\n\n :param rse_id: the rse id.\n :param files: the list of files to delete.\n :param ignore_availability: Ignore the RSE blocklisting.\n :param session: The database session in... |
@transactional_session
def __cleanup_after_replica_deletion(rse_id, files, session=None):
'\n Perform update of collections/archive associations/dids after the removal of their replicas\n :param rse_id: the rse id\n :param files: list of files whose replica got deleted\n :param session: The database ses... | -9,200,459,903,563,746,000 | Perform update of collections/archive associations/dids after the removal of their replicas
:param rse_id: the rse id
:param files: list of files whose replica got deleted
:param session: The database session in use. | lib/rucio/core/replica.py | __cleanup_after_replica_deletion | bari12/rucio | python | @transactional_session
def __cleanup_after_replica_deletion(rse_id, files, session=None):
'\n Perform update of collections/archive associations/dids after the removal of their replicas\n :param rse_id: the rse id\n :param files: list of files whose replica got deleted\n :param session: The database ses... |
@transactional_session
def get_replica(rse_id, scope, name, session=None):
'\n Get File replica.\n\n :param rse_id: The RSE Id.\n :param scope: the scope name.\n :param name: The data identifier name.\n :param session: The database session in use.\n\n :returns: A dictionary with the list of replic... | 867,883,035,569,628,500 | Get File replica.
:param rse_id: The RSE Id.
:param scope: the scope name.
:param name: The data identifier name.
:param session: The database session in use.
:returns: A dictionary with the list of replica attributes. | lib/rucio/core/replica.py | get_replica | bari12/rucio | python | @transactional_session
def get_replica(rse_id, scope, name, session=None):
'\n Get File replica.\n\n :param rse_id: The RSE Id.\n :param scope: the scope name.\n :param name: The data identifier name.\n :param session: The database session in use.\n\n :returns: A dictionary with the list of replic... |
@transactional_session
def list_and_mark_unlocked_replicas(limit, bytes=None, rse_id=None, delay_seconds=600, only_delete_obsolete=False, session=None):
'\n List RSE File replicas with no locks.\n\n :param limit: Number of replicas returned.\n :param bytes: The amount ... | 8,043,752,399,939,749,000 | List RSE File replicas with no locks.
:param limit: Number of replicas returned.
:param bytes: The amount of needed bytes.
:param rse_id: The rse_id.
:param delay_seconds: The delay to query replicas in BEING_DELETED state
:param only_delete_obsolete ... | lib/rucio/core/replica.py | list_and_mark_unlocked_replicas | bari12/rucio | python | @transactional_session
def list_and_mark_unlocked_replicas(limit, bytes=None, rse_id=None, delay_seconds=600, only_delete_obsolete=False, session=None):
'\n List RSE File replicas with no locks.\n\n :param limit: Number of replicas returned.\n :param bytes: The amount ... |
@transactional_session
def update_replicas_states(replicas, nowait=False, session=None):
'\n Update File replica information and state.\n\n :param replicas: The list of replicas.\n :param nowait: Nowait parameter for the for_update queries.\n :param session: The database session ... | 4,675,642,054,458,534,000 | Update File replica information and state.
:param replicas: The list of replicas.
:param nowait: Nowait parameter for the for_update queries.
:param session: The database session in use. | lib/rucio/core/replica.py | update_replicas_states | bari12/rucio | python | @transactional_session
def update_replicas_states(replicas, nowait=False, session=None):
'\n Update File replica information and state.\n\n :param replicas: The list of replicas.\n :param nowait: Nowait parameter for the for_update queries.\n :param session: The database session ... |
@transactional_session
def touch_replica(replica, session=None):
"\n Update the accessed_at timestamp of the given file replica/did but don't wait if row is locked.\n\n :param replica: a dictionary with the information of the affected replica.\n :param session: The database session in use.\n\n :returns:... | -6,751,399,618,882,462,000 | Update the accessed_at timestamp of the given file replica/did but don't wait if row is locked.
:param replica: a dictionary with the information of the affected replica.
:param session: The database session in use.
:returns: True, if successful, False otherwise. | lib/rucio/core/replica.py | touch_replica | bari12/rucio | python | @transactional_session
def touch_replica(replica, session=None):
"\n Update the accessed_at timestamp of the given file replica/did but don't wait if row is locked.\n\n :param replica: a dictionary with the information of the affected replica.\n :param session: The database session in use.\n\n :returns:... |
@transactional_session
def update_replica_state(rse_id, scope, name, state, session=None):
'\n Update File replica information and state.\n\n :param rse_id: the rse id.\n :param scope: the tag name.\n :param name: The data identifier name.\n :param state: The state.\n :param session: The database ... | -7,170,540,824,155,534,000 | Update File replica information and state.
:param rse_id: the rse id.
:param scope: the tag name.
:param name: The data identifier name.
:param state: The state.
:param session: The database session in use. | lib/rucio/core/replica.py | update_replica_state | bari12/rucio | python | @transactional_session
def update_replica_state(rse_id, scope, name, state, session=None):
'\n Update File replica information and state.\n\n :param rse_id: the rse id.\n :param scope: the tag name.\n :param name: The data identifier name.\n :param state: The state.\n :param session: The database ... |
@transactional_session
def get_and_lock_file_replicas(scope, name, nowait=False, restrict_rses=None, session=None):
'\n Get file replicas for a specific scope:name.\n\n :param scope: The scope of the did.\n :param name: The name of the did.\n :param nowait: Nowait parameter fo... | 3,420,387,852,648,353,300 | Get file replicas for a specific scope:name.
:param scope: The scope of the did.
:param name: The name of the did.
:param nowait: Nowait parameter for the FOR UPDATE statement
:param restrict_rses: Possible RSE_ids to filter on.
:param session: The db session in use.
:returns: ... | lib/rucio/core/replica.py | get_and_lock_file_replicas | bari12/rucio | python | @transactional_session
def get_and_lock_file_replicas(scope, name, nowait=False, restrict_rses=None, session=None):
'\n Get file replicas for a specific scope:name.\n\n :param scope: The scope of the did.\n :param name: The name of the did.\n :param nowait: Nowait parameter fo... |
@transactional_session
def get_source_replicas(scope, name, source_rses=None, session=None):
'\n Get soruce replicas for a specific scope:name.\n\n :param scope: The scope of the did.\n :param name: The name of the did.\n :param soruce_rses: Possible RSE_ids to filter on.\n :par... | -6,186,249,393,269,582,000 | Get soruce replicas for a specific scope:name.
:param scope: The scope of the did.
:param name: The name of the did.
:param soruce_rses: Possible RSE_ids to filter on.
:param session: The db session in use.
:returns: List of SQLAlchemy Replica Objects | lib/rucio/core/replica.py | get_source_replicas | bari12/rucio | python | @transactional_session
def get_source_replicas(scope, name, source_rses=None, session=None):
'\n Get soruce replicas for a specific scope:name.\n\n :param scope: The scope of the did.\n :param name: The name of the did.\n :param soruce_rses: Possible RSE_ids to filter on.\n :par... |
@transactional_session
def get_and_lock_file_replicas_for_dataset(scope, name, nowait=False, restrict_rses=None, total_threads=None, thread_id=None, session=None):
'\n Get file replicas for all files of a dataset.\n\n :param scope: The scope of the dataset.\n :param name: The name of the... | 3,723,481,605,392,194,600 | Get file replicas for all files of a dataset.
:param scope: The scope of the dataset.
:param name: The name of the dataset.
:param nowait: Nowait parameter for the FOR UPDATE statement
:param restrict_rses: Possible RSE_ids to filter on.
:param total_threads: Total threads
:param thread_id... | lib/rucio/core/replica.py | get_and_lock_file_replicas_for_dataset | bari12/rucio | python | @transactional_session
def get_and_lock_file_replicas_for_dataset(scope, name, nowait=False, restrict_rses=None, total_threads=None, thread_id=None, session=None):
'\n Get file replicas for all files of a dataset.\n\n :param scope: The scope of the dataset.\n :param name: The name of the... |
@transactional_session
def get_source_replicas_for_dataset(scope, name, source_rses=None, total_threads=None, thread_id=None, session=None):
'\n Get file replicas for all files of a dataset.\n\n :param scope: The scope of the dataset.\n :param name: The name of the dataset.\n :param s... | 4,626,561,482,023,698,000 | Get file replicas for all files of a dataset.
:param scope: The scope of the dataset.
:param name: The name of the dataset.
:param source_rses: Possible source RSE_ids to filter on.
:param total_threads: Total threads
:param thread_id: This thread
:param session: The db session in us... | lib/rucio/core/replica.py | get_source_replicas_for_dataset | bari12/rucio | python | @transactional_session
def get_source_replicas_for_dataset(scope, name, source_rses=None, total_threads=None, thread_id=None, session=None):
'\n Get file replicas for all files of a dataset.\n\n :param scope: The scope of the dataset.\n :param name: The name of the dataset.\n :param s... |
@read_session
def get_replica_atime(replica, session=None):
'\n Get the accessed_at timestamp for a replica. Just for testing.\n :param replicas: List of dictionaries {scope, name, rse_id, path}\n :param session: Database session to use.\n\n :returns: A datetime timestamp with the last access time.\n ... | -2,012,700,357,308,795,600 | Get the accessed_at timestamp for a replica. Just for testing.
:param replicas: List of dictionaries {scope, name, rse_id, path}
:param session: Database session to use.
:returns: A datetime timestamp with the last access time. | lib/rucio/core/replica.py | get_replica_atime | bari12/rucio | python | @read_session
def get_replica_atime(replica, session=None):
'\n Get the accessed_at timestamp for a replica. Just for testing.\n :param replicas: List of dictionaries {scope, name, rse_id, path}\n :param session: Database session to use.\n\n :returns: A datetime timestamp with the last access time.\n ... |
@transactional_session
def touch_collection_replicas(collection_replicas, session=None):
'\n Update the accessed_at timestamp of the given collection replicas.\n\n :param collection_replicas: the list of collection replicas.\n :param session: The database session in use.\n\n :returns: True, if successfu... | -1,533,478,739,449,387,300 | Update the accessed_at timestamp of the given collection replicas.
:param collection_replicas: the list of collection replicas.
:param session: The database session in use.
:returns: True, if successful, False otherwise. | lib/rucio/core/replica.py | touch_collection_replicas | bari12/rucio | python | @transactional_session
def touch_collection_replicas(collection_replicas, session=None):
'\n Update the accessed_at timestamp of the given collection replicas.\n\n :param collection_replicas: the list of collection replicas.\n :param session: The database session in use.\n\n :returns: True, if successfu... |
@stream_session
def list_dataset_replicas(scope, name, deep=False, session=None):
'\n :param scope: The scope of the dataset.\n :param name: The name of the dataset.\n :param deep: Lookup at the file level.\n :param session: Database session to use.\n\n :returns: A list of dictionaries containing the... | -6,567,382,506,538,051,000 | :param scope: The scope of the dataset.
:param name: The name of the dataset.
:param deep: Lookup at the file level.
:param session: Database session to use.
:returns: A list of dictionaries containing the dataset replicas
with associated metrics and timestamps | lib/rucio/core/replica.py | list_dataset_replicas | bari12/rucio | python | @stream_session
def list_dataset_replicas(scope, name, deep=False, session=None):
'\n :param scope: The scope of the dataset.\n :param name: The name of the dataset.\n :param deep: Lookup at the file level.\n :param session: Database session to use.\n\n :returns: A list of dictionaries containing the... |
@stream_session
def list_dataset_replicas_bulk(names_by_intscope, session=None):
'\n :param names_by_intscope: The dictionary of internal scopes pointing at the list of names.\n :param session: Database session to use.\n\n :returns: A list of dictionaries containing the dataset replicas\n with... | 2,755,515,626,914,224,000 | :param names_by_intscope: The dictionary of internal scopes pointing at the list of names.
:param session: Database session to use.
:returns: A list of dictionaries containing the dataset replicas
with associated metrics and timestamps | lib/rucio/core/replica.py | list_dataset_replicas_bulk | bari12/rucio | python | @stream_session
def list_dataset_replicas_bulk(names_by_intscope, session=None):
'\n :param names_by_intscope: The dictionary of internal scopes pointing at the list of names.\n :param session: Database session to use.\n\n :returns: A list of dictionaries containing the dataset replicas\n with... |
@stream_session
def list_dataset_replicas_vp(scope, name, deep=False, session=None, logger=logging.log):
'\n List dataset replicas for a DID (scope:name) using the\n Virtual Placement service.\n\n NOTICE: This is an RnD function and might change or go away at any time.\n\n :param scope: The scope of the... | 6,437,509,760,921,229,000 | List dataset replicas for a DID (scope:name) using the
Virtual Placement service.
NOTICE: This is an RnD function and might change or go away at any time.
:param scope: The scope of the dataset.
:param name: The name of the dataset.
:param deep: Lookup at the file level.
:param session: Database session to use.
:ret... | lib/rucio/core/replica.py | list_dataset_replicas_vp | bari12/rucio | python | @stream_session
def list_dataset_replicas_vp(scope, name, deep=False, session=None, logger=logging.log):
'\n List dataset replicas for a DID (scope:name) using the\n Virtual Placement service.\n\n NOTICE: This is an RnD function and might change or go away at any time.\n\n :param scope: The scope of the... |
@stream_session
def list_datasets_per_rse(rse_id, filters=None, limit=None, session=None):
'\n List datasets at a RSE.\n\n :param rse: the rse id.\n :param filters: dictionary of attributes by which the results should be filtered.\n :param limit: limit number.\n :param session: Database session to us... | -8,708,544,273,493,562,000 | List datasets at a RSE.
:param rse: the rse id.
:param filters: dictionary of attributes by which the results should be filtered.
:param limit: limit number.
:param session: Database session to use.
:returns: A list of dict dataset replicas | lib/rucio/core/replica.py | list_datasets_per_rse | bari12/rucio | python | @stream_session
def list_datasets_per_rse(rse_id, filters=None, limit=None, session=None):
'\n List datasets at a RSE.\n\n :param rse: the rse id.\n :param filters: dictionary of attributes by which the results should be filtered.\n :param limit: limit number.\n :param session: Database session to us... |
@transactional_session
def get_cleaned_updated_collection_replicas(total_workers, worker_number, limit=None, session=None):
'\n Get update request for collection replicas.\n :param total_workers: Number of total workers.\n :param worker_number: id of the executing worker.\n :param limit: ... | -3,051,547,904,663,297,500 | Get update request for collection replicas.
:param total_workers: Number of total workers.
:param worker_number: id of the executing worker.
:param limit: Maximum numberws to return.
:param session: Database session in use.
:returns: List of update requests for collect... | lib/rucio/core/replica.py | get_cleaned_updated_collection_replicas | bari12/rucio | python | @transactional_session
def get_cleaned_updated_collection_replicas(total_workers, worker_number, limit=None, session=None):
'\n Get update request for collection replicas.\n :param total_workers: Number of total workers.\n :param worker_number: id of the executing worker.\n :param limit: ... |
@transactional_session
def update_collection_replica(update_request, session=None):
'\n Update a collection replica.\n :param update_request: update request from the upated_col_rep table.\n '
if (update_request['rse_id'] is not None):
ds_length = 0
old_available_replicas = 0
ds_... | 4,138,301,468,626,472,000 | Update a collection replica.
:param update_request: update request from the upated_col_rep table. | lib/rucio/core/replica.py | update_collection_replica | bari12/rucio | python | @transactional_session
def update_collection_replica(update_request, session=None):
'\n Update a collection replica.\n :param update_request: update request from the upated_col_rep table.\n '
if (update_request['rse_id'] is not None):
ds_length = 0
old_available_replicas = 0
ds_... |
@read_session
def get_bad_pfns(limit=10000, thread=None, total_threads=None, session=None):
"\n Returns a list of bad PFNs\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this minos instance.\n :param total_threads: The total number of minos threads.\n... | -8,924,492,310,788,700,000 | Returns a list of bad PFNs
:param limit: The maximum number of replicas returned.
:param thread: The assigned thread for this minos instance.
:param total_threads: The total number of minos threads.
:param session: The database session in use.
returns: list of PFNs {'pfn': pfn, 'state': state, 'reason': reason, 'acco... | lib/rucio/core/replica.py | get_bad_pfns | bari12/rucio | python | @read_session
def get_bad_pfns(limit=10000, thread=None, total_threads=None, session=None):
"\n Returns a list of bad PFNs\n\n :param limit: The maximum number of replicas returned.\n :param thread: The assigned thread for this minos instance.\n :param total_threads: The total number of minos threads.\n... |
@transactional_session
def bulk_add_bad_replicas(replicas, account, state=BadFilesStatus.TEMPORARY_UNAVAILABLE, reason=None, expires_at=None, session=None):
'\n Bulk add new bad replicas.\n\n :param replicas: the list of bad replicas.\n :param account: The account who declared the bad replicas.\n :param... | 4,175,332,033,690,639,000 | Bulk add new bad replicas.
:param replicas: the list of bad replicas.
:param account: The account who declared the bad replicas.
:param state: The state of the file (SUSPICIOUS, BAD or TEMPORARY_UNAVAILABLE).
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | bulk_add_bad_replicas | bari12/rucio | python | @transactional_session
def bulk_add_bad_replicas(replicas, account, state=BadFilesStatus.TEMPORARY_UNAVAILABLE, reason=None, expires_at=None, session=None):
'\n Bulk add new bad replicas.\n\n :param replicas: the list of bad replicas.\n :param account: The account who declared the bad replicas.\n :param... |
@transactional_session
def bulk_delete_bad_pfns(pfns, session=None):
'\n Bulk delete bad PFNs.\n\n :param pfns: the list of new files.\n :param session: The database session in use.\n\n :returns: True is successful.\n '
pfn_clause = []
for pfn in pfns:
pfn_clause.append((models.BadPFN... | -2,324,208,928,254,189,600 | Bulk delete bad PFNs.
:param pfns: the list of new files.
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | bulk_delete_bad_pfns | bari12/rucio | python | @transactional_session
def bulk_delete_bad_pfns(pfns, session=None):
'\n Bulk delete bad PFNs.\n\n :param pfns: the list of new files.\n :param session: The database session in use.\n\n :returns: True is successful.\n '
pfn_clause = []
for pfn in pfns:
pfn_clause.append((models.BadPFN... |
@transactional_session
def bulk_delete_bad_replicas(bad_replicas, session=None):
'\n Bulk delete bad replica.\n\n :param bad_replicas: The list of bad replicas to delete (Dictionaries).\n :param session: The database session in use.\n\n :returns: True is successful.\n '
replica_clause ... | 2,723,186,127,305,752,600 | Bulk delete bad replica.
:param bad_replicas: The list of bad replicas to delete (Dictionaries).
:param session: The database session in use.
:returns: True is successful. | lib/rucio/core/replica.py | bulk_delete_bad_replicas | bari12/rucio | python | @transactional_session
def bulk_delete_bad_replicas(bad_replicas, session=None):
'\n Bulk delete bad replica.\n\n :param bad_replicas: The list of bad replicas to delete (Dictionaries).\n :param session: The database session in use.\n\n :returns: True is successful.\n '
replica_clause ... |
@transactional_session
def add_bad_pfns(pfns, account, state, reason=None, expires_at=None, session=None):
'\n Add bad PFNs.\n\n :param pfns: the list of new files.\n :param account: The account who declared the bad replicas.\n :param state: One of the possible states : BAD, SUSPICIOUS, TEMPORARY_UNAVAI... | 1,059,017,633,819,548,800 | Add bad PFNs.
:param pfns: the list of new files.
:param account: The account who declared the bad replicas.
:param state: One of the possible states : BAD, SUSPICIOUS, TEMPORARY_UNAVAILABLE.
:param reason: A string describing the reason of the loss.
:param expires_at: Specify a timeout for the TEMPORARY_UNAVAILABLE r... | lib/rucio/core/replica.py | add_bad_pfns | bari12/rucio | python | @transactional_session
def add_bad_pfns(pfns, account, state, reason=None, expires_at=None, session=None):
'\n Add bad PFNs.\n\n :param pfns: the list of new files.\n :param account: The account who declared the bad replicas.\n :param state: One of the possible states : BAD, SUSPICIOUS, TEMPORARY_UNAVAI... |
@read_session
def list_expired_temporary_unavailable_replicas(total_workers, worker_number, limit=10000, session=None):
'\n List the expired temporary unavailable replicas\n\n :param total_workers: Number of total workers.\n :param worker_number: id of the executing worker.\n :param limit: ... | 4,703,407,185,827,953,000 | List the expired temporary unavailable replicas
:param total_workers: Number of total workers.
:param worker_number: id of the executing worker.
:param limit: The maximum number of replicas returned.
:param session: The database session in use. | lib/rucio/core/replica.py | list_expired_temporary_unavailable_replicas | bari12/rucio | python | @read_session
def list_expired_temporary_unavailable_replicas(total_workers, worker_number, limit=10000, session=None):
'\n List the expired temporary unavailable replicas\n\n :param total_workers: Number of total workers.\n :param worker_number: id of the executing worker.\n :param limit: ... |
@read_session
def get_replicas_state(scope=None, name=None, session=None):
'\n Method used by the necromancer to get all the replicas of a DIDs\n :param scope: The scope of the file.\n :param name: The name of the file.\n :param session: The database session in use.\n\n :returns: A dictionary with th... | -4,963,462,164,844,283,000 | Method used by the necromancer to get all the replicas of a DIDs
:param scope: The scope of the file.
:param name: The name of the file.
:param session: The database session in use.
:returns: A dictionary with the list of states as keys and the rse_ids as value | lib/rucio/core/replica.py | get_replicas_state | bari12/rucio | python | @read_session
def get_replicas_state(scope=None, name=None, session=None):
'\n Method used by the necromancer to get all the replicas of a DIDs\n :param scope: The scope of the file.\n :param name: The name of the file.\n :param session: The database session in use.\n\n :returns: A dictionary with th... |
@read_session
def get_suspicious_files(rse_expression, filter=None, **kwargs):
"\n Gets a list of replicas from bad_replicas table which are: declared more than <nattempts> times since <younger_than> date,\n present on the RSE specified by the <rse_expression> and do not have a state in <exclude_states> list.... | 7,221,747,538,460,163,000 | Gets a list of replicas from bad_replicas table which are: declared more than <nattempts> times since <younger_than> date,
present on the RSE specified by the <rse_expression> and do not have a state in <exclude_states> list.
Selected replicas can also be required to be <available_elsewhere> on another RSE than the one... | lib/rucio/core/replica.py | get_suspicious_files | bari12/rucio | python | @read_session
def get_suspicious_files(rse_expression, filter=None, **kwargs):
"\n Gets a list of replicas from bad_replicas table which are: declared more than <nattempts> times since <younger_than> date,\n present on the RSE specified by the <rse_expression> and do not have a state in <exclude_states> list.... |
@transactional_session
def set_tombstone(rse_id, scope, name, tombstone=OBSOLETE, session=None):
'\n Sets a tombstone on a replica.\n\n :param rse_id: ID of RSE.\n :param scope: scope of the replica DID.\n :param name: name of the replica DID.\n :param tombstone: the tombstone to set. Default is OBSO... | -6,601,409,596,648,705,000 | Sets a tombstone on a replica.
:param rse_id: ID of RSE.
:param scope: scope of the replica DID.
:param name: name of the replica DID.
:param tombstone: the tombstone to set. Default is OBSOLETE
:param session: database session in use. | lib/rucio/core/replica.py | set_tombstone | bari12/rucio | python | @transactional_session
def set_tombstone(rse_id, scope, name, tombstone=OBSOLETE, session=None):
'\n Sets a tombstone on a replica.\n\n :param rse_id: ID of RSE.\n :param scope: scope of the replica DID.\n :param name: name of the replica DID.\n :param tombstone: the tombstone to set. Default is OBSO... |
@read_session
def get_RSEcoverage_of_dataset(scope, name, session=None):
'\n Get total bytes present on RSEs\n\n :param scope: Scope of the dataset\n :param name: Name of the dataset\n :param session: The db session.\n :return: Dictionary { rse_id :... | 4,917,449,103,829,381,000 | Get total bytes present on RSEs
:param scope: Scope of the dataset
:param name: Name of the dataset
:param session: The db session.
:return: Dictionary { rse_id : <total bytes present at rse_id> } | lib/rucio/core/replica.py | get_RSEcoverage_of_dataset | bari12/rucio | python | @read_session
def get_RSEcoverage_of_dataset(scope, name, session=None):
'\n Get total bytes present on RSEs\n\n :param scope: Scope of the dataset\n :param name: Name of the dataset\n :param session: The db session.\n :return: Dictionary { rse_id :... |
def __init__(self, errors=None):
'ErrorList - a model defined in Swagger'
self._errors = None
self.discriminator = None
if (errors is not None):
self.errors = errors | -8,961,291,312,829,862,000 | ErrorList - a model defined in Swagger | controlm_py/models/error_list.py | __init__ | dcompane/controlm_py | python | def __init__(self, errors=None):
self._errors = None
self.discriminator = None
if (errors is not None):
self.errors = errors |
@property
def errors(self):
'Gets the errors of this ErrorList. # noqa: E501\n\n\n :return: The errors of this ErrorList. # noqa: E501\n :rtype: list[ErrorData]\n '
return self._errors | 5,822,717,732,938,109,000 | Gets the errors of this ErrorList. # noqa: E501
:return: The errors of this ErrorList. # noqa: E501
:rtype: list[ErrorData] | controlm_py/models/error_list.py | errors | dcompane/controlm_py | python | @property
def errors(self):
'Gets the errors of this ErrorList. # noqa: E501\n\n\n :return: The errors of this ErrorList. # noqa: E501\n :rtype: list[ErrorData]\n '
return self._errors |
@errors.setter
def errors(self, errors):
'Sets the errors of this ErrorList.\n\n\n :param errors: The errors of this ErrorList. # noqa: E501\n :type: list[ErrorData]\n '
self._errors = errors | -2,227,954,922,095,561,200 | Sets the errors of this ErrorList.
:param errors: The errors of this ErrorList. # noqa: E501
:type: list[ErrorData] | controlm_py/models/error_list.py | errors | dcompane/controlm_py | python | @errors.setter
def errors(self, errors):
'Sets the errors of this ErrorList.\n\n\n :param errors: The errors of this ErrorList. # noqa: E501\n :type: list[ErrorData]\n '
self._errors = errors |
def to_dict(self):
'Returns the model properties as a dict'
result = {}
for (attr, _) in six.iteritems(self.swagger_types):
value = getattr(self, attr)
if isinstance(value, list):
result[attr] = list(map((lambda x: (x.to_dict() if hasattr(x, 'to_dict') else x)), value))
e... | 3,112,151,779,715,025,400 | Returns the model properties as a dict | controlm_py/models/error_list.py | to_dict | dcompane/controlm_py | python | def to_dict(self):
result = {}
for (attr, _) in six.iteritems(self.swagger_types):
value = getattr(self, attr)
if isinstance(value, list):
result[attr] = list(map((lambda x: (x.to_dict() if hasattr(x, 'to_dict') else x)), value))
elif hasattr(value, 'to_dict'):
... |
def to_str(self):
'Returns the string representation of the model'
return pprint.pformat(self.to_dict()) | 5,849,158,643,760,736,000 | Returns the string representation of the model | controlm_py/models/error_list.py | to_str | dcompane/controlm_py | python | def to_str(self):
return pprint.pformat(self.to_dict()) |
def __repr__(self):
'For `print` and `pprint`'
return self.to_str() | -8,960,031,694,814,905,000 | For `print` and `pprint` | controlm_py/models/error_list.py | __repr__ | dcompane/controlm_py | python | def __repr__(self):
return self.to_str() |
def __eq__(self, other):
'Returns true if both objects are equal'
if (not isinstance(other, ErrorList)):
return False
return (self.__dict__ == other.__dict__) | -3,619,122,469,386,630,000 | Returns true if both objects are equal | controlm_py/models/error_list.py | __eq__ | dcompane/controlm_py | python | def __eq__(self, other):
if (not isinstance(other, ErrorList)):
return False
return (self.__dict__ == other.__dict__) |
def __ne__(self, other):
'Returns true if both objects are not equal'
return (not (self == other)) | 7,764,124,047,908,058,000 | Returns true if both objects are not equal | controlm_py/models/error_list.py | __ne__ | dcompane/controlm_py | python | def __ne__(self, other):
return (not (self == other)) |
def __call__(self, p):
'\n Return the value of the link function. This is just a placeholder.\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g(p) : array_like\n The value of the link function g(p) = z\n ... | 3,439,035,475,943,891,500 | Return the value of the link function. This is just a placeholder.
Parameters
----------
p : array_like
Probabilities
Returns
-------
g(p) : array_like
The value of the link function g(p) = z | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n Return the value of the link function. This is just a placeholder.\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g(p) : array_like\n The value of the link function g(p) = z\n ... |
def inverse(self, z):
'\n Inverse of the link function. Just a placeholder.\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor of the transformed variable\n in the IRLS algorithm for GLM.\n\n Returns\n -------\n ... | 589,133,332,174,300,900 | Inverse of the link function. Just a placeholder.
Parameters
----------
z : array_like
`z` is usually the linear predictor of the transformed variable
in the IRLS algorithm for GLM.
Returns
-------
g^(-1)(z) : ndarray
The value of the inverse of the link function g^(-1)(z) = p | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of the link function. Just a placeholder.\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor of the transformed variable\n in the IRLS algorithm for GLM.\n\n Returns\n -------\n ... |
def deriv(self, p):
"\n Derivative of the link function g'(p). Just a placeholder.\n\n Parameters\n ----------\n p : array_like\n\n Returns\n -------\n g'(p) : ndarray\n The value of the derivative of the link function g'(p)\n "
return NotImple... | -7,053,478,128,397,519,000 | Derivative of the link function g'(p). Just a placeholder.
Parameters
----------
p : array_like
Returns
-------
g'(p) : ndarray
The value of the derivative of the link function g'(p) | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of the link function g'(p). Just a placeholder.\n\n Parameters\n ----------\n p : array_like\n\n Returns\n -------\n g'(p) : ndarray\n The value of the derivative of the link function g'(p)\n "
return NotImple... |
def deriv2(self, p):
"Second derivative of the link function g''(p)\n\n implemented through numerical differentiation\n "
from statsmodels.tools.numdiff import _approx_fprime_cs_scalar
return _approx_fprime_cs_scalar(p, self.deriv) | 8,712,612,717,014,624,000 | Second derivative of the link function g''(p)
implemented through numerical differentiation | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"Second derivative of the link function g(p)\n\n implemented through numerical differentiation\n "
from statsmodels.tools.numdiff import _approx_fprime_cs_scalar
return _approx_fprime_cs_scalar(p, self.deriv) |
def inverse_deriv(self, z):
"\n Derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n The valu... | 9,001,918,539,944,982,000 | Derivative of the inverse link function g^(-1)(z).
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g'^(-1)(z) : ndarray
The value of the derivative of the inverse of the link function
Notes
-----
This reference implementation gives the correct ... | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n The valu... |
def inverse_deriv2(self, z):
"\n Second derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n ... | -3,968,055,418,984,185,300 | Second derivative of the inverse link function g^(-1)(z).
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g'^(-1)(z) : ndarray
The value of the second derivative of the inverse of the link
function
Notes
-----
This reference implementation ... | statsmodels/genmod/families/links.py | inverse_deriv2 | BioGeneTools/statsmodels | python | def inverse_deriv2(self, z):
"\n Second derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n ... |
def _clean(self, p):
'\n Clip logistic values to range (eps, 1-eps)\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n pclip : ndarray\n Clipped probabilities\n '
return np.clip(p, FLOAT_EPS, (1.0 - F... | -3,440,027,265,344,145,400 | Clip logistic values to range (eps, 1-eps)
Parameters
----------
p : array_like
Probabilities
Returns
-------
pclip : ndarray
Clipped probabilities | statsmodels/genmod/families/links.py | _clean | BioGeneTools/statsmodels | python | def _clean(self, p):
'\n Clip logistic values to range (eps, 1-eps)\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n pclip : ndarray\n Clipped probabilities\n '
return np.clip(p, FLOAT_EPS, (1.0 - F... |
def __call__(self, p):
'\n The logit transform\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n z : ndarray\n Logit transform of `p`\n\n Notes\n -----\n g(p) = log(p / (1 - p))\n '
... | 240,232,997,412,097,760 | The logit transform
Parameters
----------
p : array_like
Probabilities
Returns
-------
z : ndarray
Logit transform of `p`
Notes
-----
g(p) = log(p / (1 - p)) | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n The logit transform\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n z : ndarray\n Logit transform of `p`\n\n Notes\n -----\n g(p) = log(p / (1 - p))\n '
... |
def inverse(self, z):
'\n Inverse of the logit transform\n\n Parameters\n ----------\n z : array_like\n The value of the logit transform at `p`\n\n Returns\n -------\n p : ndarray\n Probabilities\n\n Notes\n -----\n g^(-1)(z... | 5,521,868,919,720,613,000 | Inverse of the logit transform
Parameters
----------
z : array_like
The value of the logit transform at `p`
Returns
-------
p : ndarray
Probabilities
Notes
-----
g^(-1)(z) = exp(z)/(1+exp(z)) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of the logit transform\n\n Parameters\n ----------\n z : array_like\n The value of the logit transform at `p`\n\n Returns\n -------\n p : ndarray\n Probabilities\n\n Notes\n -----\n g^(-1)(z... |
def deriv(self, p):
"\n Derivative of the logit transform\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g'(p) : ndarray\n Value of the derivative of logit transform at `p`\n\n Notes\n -----\n ... | -3,496,373,472,863,382,500 | Derivative of the logit transform
Parameters
----------
p : array_like
Probabilities
Returns
-------
g'(p) : ndarray
Value of the derivative of logit transform at `p`
Notes
-----
g'(p) = 1 / (p * (1 - p))
Alias for `Logit`:
logit = Logit() | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of the logit transform\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g'(p) : ndarray\n Value of the derivative of logit transform at `p`\n\n Notes\n -----\n ... |
def inverse_deriv(self, z):
"\n Derivative of the inverse of the logit transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n The value ... | -8,336,254,912,463,244,000 | Derivative of the inverse of the logit transform
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g'^(-1)(z) : ndarray
The value of the derivative of the inverse of the logit function | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse of the logit transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g'^(-1)(z) : ndarray\n The value ... |
def deriv2(self, p):
"\n Second derivative of the logit function.\n\n Parameters\n ----------\n p : array_like\n probabilities\n\n Returns\n -------\n g''(z) : ndarray\n The value of the second derivative of the logit function\n "
v =... | -3,825,766,102,883,364,400 | Second derivative of the logit function.
Parameters
----------
p : array_like
probabilities
Returns
-------
g''(z) : ndarray
The value of the second derivative of the logit function | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the logit function.\n\n Parameters\n ----------\n p : array_like\n probabilities\n\n Returns\n -------\n g(z) : ndarray\n The value of the second derivative of the logit function\n "
v = (... |
def __call__(self, p):
'\n Power transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n z : array_like\n Power transform of x\n\n Notes\n -----\n g(p) = x**self.power\n... | 6,490,001,479,540,673,000 | Power transform link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
z : array_like
Power transform of x
Notes
-----
g(p) = x**self.power | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n Power transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n z : array_like\n Power transform of x\n\n Notes\n -----\n g(p) = x**self.power\n... |
def inverse(self, z):
'\n Inverse of the power transform link function\n\n Parameters\n ----------\n `z` : array_like\n Value of the transformed mean parameters at `p`\n\n Returns\n -------\n `p` : ndarray\n Mean parameters\n\n Notes\n ... | 766,649,145,307,345,200 | Inverse of the power transform link function
Parameters
----------
`z` : array_like
Value of the transformed mean parameters at `p`
Returns
-------
`p` : ndarray
Mean parameters
Notes
-----
g^(-1)(z`) = `z`**(1/`power`) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of the power transform link function\n\n Parameters\n ----------\n `z` : array_like\n Value of the transformed mean parameters at `p`\n\n Returns\n -------\n `p` : ndarray\n Mean parameters\n\n Notes\n ... |
def deriv(self, p):
"\n Derivative of the power transform\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n Derivative of power transform of `p`\n\n Notes\n -----\n g'(`... | -4,093,614,081,125,798,000 | Derivative of the power transform
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g'(p) : ndarray
Derivative of power transform of `p`
Notes
-----
g'(`p`) = `power` * `p`**(`power` - 1) | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of the power transform\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n Derivative of power transform of `p`\n\n Notes\n -----\n g'(`... |
def deriv2(self, p):
"\n Second derivative of the power transform\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g''(p) : ndarray\n Second derivative of the power transform of `p`\n\n Notes\n ... | -2,521,458,613,253,394,400 | Second derivative of the power transform
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g''(p) : ndarray
Second derivative of the power transform of `p`
Notes
-----
g''(`p`) = `power` * (`power` - 1) * `p`**(`power` - 2) | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the power transform\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g(p) : ndarray\n Second derivative of the power transform of `p`\n\n Notes\n -... |
def inverse_deriv(self, z):
"\n Derivative of the inverse of the power transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value ... | 8,179,986,447,003,525,000 | Derivative of the inverse of the power transform
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g^(-1)'(z) : ndarray
The value of the derivative of the inverse of the power transform
function | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse of the power transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value ... |
def inverse_deriv2(self, z):
"\n Second derivative of the inverse of the power transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n Th... | 4,198,307,413,071,056,000 | Second derivative of the inverse of the power transform
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g^(-1)'(z) : ndarray
The value of the derivative of the inverse of the power transform
function | statsmodels/genmod/families/links.py | inverse_deriv2 | BioGeneTools/statsmodels | python | def inverse_deriv2(self, z):
"\n Second derivative of the inverse of the power transform\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n Th... |
def __call__(self, p, **extra):
'\n Log transform link function\n\n Parameters\n ----------\n x : array_like\n Mean parameters\n\n Returns\n -------\n z : ndarray\n log(x)\n\n Notes\n -----\n g(p) = log(p)\n '
x =... | -9,197,943,716,248,332,000 | Log transform link function
Parameters
----------
x : array_like
Mean parameters
Returns
-------
z : ndarray
log(x)
Notes
-----
g(p) = log(p) | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p, **extra):
'\n Log transform link function\n\n Parameters\n ----------\n x : array_like\n Mean parameters\n\n Returns\n -------\n z : ndarray\n log(x)\n\n Notes\n -----\n g(p) = log(p)\n '
x =... |
def inverse(self, z):
'\n Inverse of log transform link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n p : ndarray\n The mean probabilities given the value of the inverse `z`\... | -7,004,327,152,976,738,000 | Inverse of log transform link function
Parameters
----------
z : ndarray
The inverse of the link function at `p`
Returns
-------
p : ndarray
The mean probabilities given the value of the inverse `z`
Notes
-----
g^{-1}(z) = exp(z) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of log transform link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n p : ndarray\n The mean probabilities given the value of the inverse `z`\... |
def deriv(self, p):
"\n Derivative of log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n derivative of log transform of x\n\n Notes\n -----\n ... | 4,113,575,122,088,470,500 | Derivative of log transform link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g'(p) : ndarray
derivative of log transform of x
Notes
-----
g'(x) = 1/x | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n derivative of log transform of x\n\n Notes\n -----\n ... |
def deriv2(self, p):
"\n Second derivative of the log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g''(p) : ndarray\n Second derivative of log transform of x\n\n Notes\n ... | 5,554,803,495,933,919,000 | Second derivative of the log transform link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g''(p) : ndarray
Second derivative of log transform of x
Notes
-----
g''(x) = -1/x^2 | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g(p) : ndarray\n Second derivative of log transform of x\n\n Notes\n ... |
def inverse_deriv(self, z):
"\n Derivative of the inverse of the log transform link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value of the deri... | -7,386,214,934,868,334,000 | Derivative of the inverse of the log transform link function
Parameters
----------
z : ndarray
The inverse of the link function at `p`
Returns
-------
g^(-1)'(z) : ndarray
The value of the derivative of the inverse of the log function,
the exponential function | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse of the log transform link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value of the deri... |
def __call__(self, p):
'\n CDF link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n z : ndarray\n (ppf) inverse of CDF transform of p\n\n Notes\n -----\n g(`p`) = `dbn`.ppf(`p`... | -3,896,929,312,686,040,600 | CDF link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
z : ndarray
(ppf) inverse of CDF transform of p
Notes
-----
g(`p`) = `dbn`.ppf(`p`) | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n CDF link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n z : ndarray\n (ppf) inverse of CDF transform of p\n\n Notes\n -----\n g(`p`) = `dbn`.ppf(`p`... |
def inverse(self, z):
'\n The inverse of the CDF link\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean probabilities. The value of the inverse of CDF ... | -6,597,804,467,319,204,000 | The inverse of the CDF link
Parameters
----------
z : array_like
The value of the inverse of the link function at `p`
Returns
-------
p : ndarray
Mean probabilities. The value of the inverse of CDF link of `z`
Notes
-----
g^(-1)(`z`) = `dbn`.cdf(`z`) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n The inverse of the CDF link\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean probabilities. The value of the inverse of CDF ... |
def deriv(self, p):
"\n Derivative of CDF link\n\n Parameters\n ----------\n p : array_like\n mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of CDF transform at `p`\n\n Notes\n -----\n g'(`p`) = 1./... | -9,205,382,292,249,141,000 | Derivative of CDF link
Parameters
----------
p : array_like
mean parameters
Returns
-------
g'(p) : ndarray
The derivative of CDF transform at `p`
Notes
-----
g'(`p`) = 1./ `dbn`.pdf(`dbn`.ppf(`p`)) | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of CDF link\n\n Parameters\n ----------\n p : array_like\n mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of CDF transform at `p`\n\n Notes\n -----\n g'(`p`) = 1./... |
def deriv2(self, p):
"\n Second derivative of the link function g''(p)\n\n implemented through numerical differentiation\n "
p = self._clean(p)
linpred = self.dbn.ppf(p)
return ((- self.inverse_deriv2(linpred)) / (self.dbn.pdf(linpred) ** 3)) | 424,918,090,788,082,240 | Second derivative of the link function g''(p)
implemented through numerical differentiation | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the link function g(p)\n\n implemented through numerical differentiation\n "
p = self._clean(p)
linpred = self.dbn.ppf(p)
return ((- self.inverse_deriv2(linpred)) / (self.dbn.pdf(linpred) ** 3)) |
def deriv2_numdiff(self, p):
"\n Second derivative of the link function g''(p)\n\n implemented through numerical differentiation\n "
from statsmodels.tools.numdiff import _approx_fprime_scalar
p = np.atleast_1d(p)
return _approx_fprime_scalar(p, self.deriv, centered=True) | -7,543,261,515,321,102,000 | Second derivative of the link function g''(p)
implemented through numerical differentiation | statsmodels/genmod/families/links.py | deriv2_numdiff | BioGeneTools/statsmodels | python | def deriv2_numdiff(self, p):
"\n Second derivative of the link function g(p)\n\n implemented through numerical differentiation\n "
from statsmodels.tools.numdiff import _approx_fprime_scalar
p = np.atleast_1d(p)
return _approx_fprime_scalar(p, self.deriv, centered=True) |
def inverse_deriv(self, z):
"\n Derivative of the inverse link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value of the derivative of the inverse... | -7,022,887,122,084,683,000 | Derivative of the inverse link function
Parameters
----------
z : ndarray
The inverse of the link function at `p`
Returns
-------
g^(-1)'(z) : ndarray
The value of the derivative of the inverse of the logit function.
This is just the pdf in a CDFLink, | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse link function\n\n Parameters\n ----------\n z : ndarray\n The inverse of the link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n The value of the derivative of the inverse... |
def inverse_deriv2(self, z):
"\n Second derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)''(z) : ndarray\n ... | -7,714,157,241,861,151,000 | Second derivative of the inverse link function g^(-1)(z).
Parameters
----------
z : array_like
`z` is usually the linear predictor for a GLM or GEE model.
Returns
-------
g^(-1)''(z) : ndarray
The value of the second derivative of the inverse of the link
function
Notes
-----
This method should be overwri... | statsmodels/genmod/families/links.py | inverse_deriv2 | BioGeneTools/statsmodels | python | def inverse_deriv2(self, z):
"\n Second derivative of the inverse link function g^(-1)(z).\n\n Parameters\n ----------\n z : array_like\n `z` is usually the linear predictor for a GLM or GEE model.\n\n Returns\n -------\n g^(-1)(z) : ndarray\n T... |
def inverse_deriv2(self, z):
'\n Second derivative of the inverse link function\n\n This is the derivative of the pdf in a CDFLink\n\n '
return ((- z) * self.dbn.pdf(z)) | -2,904,610,982,194,967,600 | Second derivative of the inverse link function
This is the derivative of the pdf in a CDFLink | statsmodels/genmod/families/links.py | inverse_deriv2 | BioGeneTools/statsmodels | python | def inverse_deriv2(self, z):
'\n Second derivative of the inverse link function\n\n This is the derivative of the pdf in a CDFLink\n\n '
return ((- z) * self.dbn.pdf(z)) |
def deriv2(self, p):
"\n Second derivative of the link function g''(p)\n\n "
p = self._clean(p)
linpred = self.dbn.ppf(p)
return (linpred / (self.dbn.pdf(linpred) ** 2)) | -5,048,292,477,726,417,000 | Second derivative of the link function g''(p) | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n \n\n "
p = self._clean(p)
linpred = self.dbn.ppf(p)
return (linpred / (self.dbn.pdf(linpred) ** 2)) |
def deriv2(self, p):
"\n Second derivative of the Cauchy link function.\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g''(p) : ndarray\n Value of the second derivative of Cauchy link function at `p`\n ... | 2,386,467,962,168,369,000 | Second derivative of the Cauchy link function.
Parameters
----------
p : array_like
Probabilities
Returns
-------
g''(p) : ndarray
Value of the second derivative of Cauchy link function at `p` | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the Cauchy link function.\n\n Parameters\n ----------\n p : array_like\n Probabilities\n\n Returns\n -------\n g(p) : ndarray\n Value of the second derivative of Cauchy link function at `p`\n ... |
def __call__(self, p):
'\n C-Log-Log transform link function\n\n Parameters\n ----------\n p : ndarray\n Mean parameters\n\n Returns\n -------\n z : ndarray\n The CLogLog transform of `p`\n\n Notes\n -----\n g(p) = log(-log(... | 1,949,863,504,250,344,400 | C-Log-Log transform link function
Parameters
----------
p : ndarray
Mean parameters
Returns
-------
z : ndarray
The CLogLog transform of `p`
Notes
-----
g(p) = log(-log(1-p)) | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n C-Log-Log transform link function\n\n Parameters\n ----------\n p : ndarray\n Mean parameters\n\n Returns\n -------\n z : ndarray\n The CLogLog transform of `p`\n\n Notes\n -----\n g(p) = log(-log(... |
def inverse(self, z):
'\n Inverse of C-Log-Log transform link function\n\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the CLogLog link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean parameters\n\n ... | 1,582,492,503,606,269,000 | Inverse of C-Log-Log transform link function
Parameters
----------
z : array_like
The value of the inverse of the CLogLog link function at `p`
Returns
-------
p : ndarray
Mean parameters
Notes
-----
g^(-1)(`z`) = 1-exp(-exp(`z`)) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of C-Log-Log transform link function\n\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the CLogLog link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean parameters\n\n ... |
def deriv(self, p):
"\n Derivative of C-Log-Log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of the CLogLog transform link function\n\n Not... | -2,819,306,609,872,138,000 | Derivative of C-Log-Log transform link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g'(p) : ndarray
The derivative of the CLogLog transform link function
Notes
-----
g'(p) = - 1 / ((p-1)*log(1-p)) | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of C-Log-Log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of the CLogLog transform link function\n\n Not... |
def deriv2(self, p):
"\n Second derivative of the C-Log-Log ink function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g''(p) : ndarray\n The second derivative of the CLogLog link function\n "
... | 1,051,177,207,821,956,500 | Second derivative of the C-Log-Log ink function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g''(p) : ndarray
The second derivative of the CLogLog link function | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the C-Log-Log ink function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g(p) : ndarray\n The second derivative of the CLogLog link function\n "
p ... |
def inverse_deriv(self, z):
"\n Derivative of the inverse of the C-Log-Log transform link function\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the CLogLog link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n ... | 1,415,103,664,460,894,500 | Derivative of the inverse of the C-Log-Log transform link function
Parameters
----------
z : array_like
The value of the inverse of the CLogLog link function at `p`
Returns
-------
g^(-1)'(z) : ndarray
The derivative of the inverse of the CLogLog link function | statsmodels/genmod/families/links.py | inverse_deriv | BioGeneTools/statsmodels | python | def inverse_deriv(self, z):
"\n Derivative of the inverse of the C-Log-Log transform link function\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the CLogLog link function at `p`\n\n Returns\n -------\n g^(-1)'(z) : ndarray\n ... |
def __call__(self, p):
'\n Log-Log transform link function\n\n Parameters\n ----------\n p : ndarray\n Mean parameters\n\n Returns\n -------\n z : ndarray\n The LogLog transform of `p`\n\n Notes\n -----\n g(p) = -log(-log(p)... | -5,263,666,381,483,923,000 | Log-Log transform link function
Parameters
----------
p : ndarray
Mean parameters
Returns
-------
z : ndarray
The LogLog transform of `p`
Notes
-----
g(p) = -log(-log(p)) | statsmodels/genmod/families/links.py | __call__ | BioGeneTools/statsmodels | python | def __call__(self, p):
'\n Log-Log transform link function\n\n Parameters\n ----------\n p : ndarray\n Mean parameters\n\n Returns\n -------\n z : ndarray\n The LogLog transform of `p`\n\n Notes\n -----\n g(p) = -log(-log(p)... |
def inverse(self, z):
'\n Inverse of Log-Log transform link function\n\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the LogLog link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean parameters\n\n No... | 455,481,010,670,740,100 | Inverse of Log-Log transform link function
Parameters
----------
z : array_like
The value of the inverse of the LogLog link function at `p`
Returns
-------
p : ndarray
Mean parameters
Notes
-----
g^(-1)(`z`) = exp(-exp(-`z`)) | statsmodels/genmod/families/links.py | inverse | BioGeneTools/statsmodels | python | def inverse(self, z):
'\n Inverse of Log-Log transform link function\n\n\n Parameters\n ----------\n z : array_like\n The value of the inverse of the LogLog link function at `p`\n\n Returns\n -------\n p : ndarray\n Mean parameters\n\n No... |
def deriv(self, p):
"\n Derivative of Log-Log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of the LogLog transform link function\n\n Notes\... | 2,950,546,271,047,227,400 | Derivative of Log-Log transform link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g'(p) : ndarray
The derivative of the LogLog transform link function
Notes
-----
g'(p) = - 1 /(p * log(p)) | statsmodels/genmod/families/links.py | deriv | BioGeneTools/statsmodels | python | def deriv(self, p):
"\n Derivative of Log-Log transform link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g'(p) : ndarray\n The derivative of the LogLog transform link function\n\n Notes\... |
def deriv2(self, p):
"\n Second derivative of the Log-Log link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g''(p) : ndarray\n The second derivative of the LogLog link function\n "
p ... | 8,769,241,807,912,562,000 | Second derivative of the Log-Log link function
Parameters
----------
p : array_like
Mean parameters
Returns
-------
g''(p) : ndarray
The second derivative of the LogLog link function | statsmodels/genmod/families/links.py | deriv2 | BioGeneTools/statsmodels | python | def deriv2(self, p):
"\n Second derivative of the Log-Log link function\n\n Parameters\n ----------\n p : array_like\n Mean parameters\n\n Returns\n -------\n g(p) : ndarray\n The second derivative of the LogLog link function\n "
p = ... |
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