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science.pico_ner
science.pico_ner.519
[ { "content": "In this task, you are given an abstract from a biomedical research paper as input, and your task is to locate all unique named entities within the given input. You should only select entities from the following types: [\"Intervention\", \"Outcome\", \"Participant\"]. Also provide the type for each...
science.bioasq_factoid_qa
science.bioasq_factoid_qa.932
[ { "content": "You will be shown biomedical passages and your task is to answer the provided question. Provide a concise and accurate response and do not include any additional text in the response other than the answer.\n\nQuestion: Where, in the body, would the Cobb-Stainsby excision arthroplasty be performed?...
science.qasa_abstractive_qa
science.qasa_abstractive_qa.874
[ { "content": "You will be shown an excerpt from a computer science research paper, followed by a question about the paper. Please answer the question given the context. Do not include any text in your response other than the answer.\n\nContext: In contrast to these approaches, FaceNet directly trains its output...
science.chemprot_re
science.chemprot_re.239
[ { "content": "Given an abstract from a research paper, your task is to identify and label relationships between chemical compounds and genes mentioned in the abstract.\n\nThe relationship type must be one of ['DOWNREGULATOR', 'SUBSTRATE', 'INDIRECT-REGULATOR', 'PART-OF', 'MODULATOR-ACTIVATOR', 'REGULATOR', 'INH...
science.chemdner_ner
science.chemdner_ner.801
[ { "content": "In this task, you are given an abstract from a biomedical research paper as input, and your task is to locate all unique named entities within the given input. You should only select entities from the following types: [\"Chemical\"]. Also provide the type for each entity.\n\nGenerate the output as...
science.healthver_entailment
science.healthver_entailment.1897
[ { "content": "You will be shown a claim about public health and the abstract of a biomedical research paper. Each sentence from the abstract will be on a separate line. Your task is to return a JSON object with two fields:\n\n- \"verdict\": The fact-checking verdict. If the information in the abstract supports ...
science.scicite_classification
science.scicite_classification.2416
[ { "content": "You will be presented with a citation sentence from a research paper. Classify the intent behind this citation by choosing from one of the following categories:\n\n- Method: Cites the paper for its methodology or procedure.\n- Background: Cites the paper to provide background information.\n- Resul...
science.scientific_lay_summarisation_elife_single_doc_summ
science.scientific_lay_summarisation_elife_single_doc_summ.4142
[ { "content": "Below you will find sections from a biomedical research paper, including the abstract, introduction, and discussion. Please write a summary that would be comprehensible to someone without scientific expertise. You should preserve the key findings and insights. You may use necessary scientific term...
science.scientific_lay_summarisation_elife_single_doc_summ
science.scientific_lay_summarisation_elife_single_doc_summ.1799
[ { "content": "You will be presented with the abstract, introduction, and discussion section from a biomedical research article. Your task is to create a summary that a layperson can understand, capturing the essence of the research article. Keep essential scientific terms, but ensure that the language remains c...
science.genia_ner
science.genia_ner.1136
[ { "content": "In this task, you are given an abstract from a biomedical research paper as input, and your task is to locate all unique named entities within the given input. You should only select entities from the following types: [\"Protein\", \"RNA\", \"CellType\", \"DNA\", \"CellLine\"]. Also provide the ty...
science.covidfact_entailment
science.covidfact_entailment.498
[ { "content": "You will be shown a claim related to the COVID-19 pandemic, and the abstract of a biomedical research paper. Each sentence from the abstract will be on a separate line. Your task is to return a JSON object with two fields:\n\n- \"verdict\": The fact-checking verdict. If the information in the abst...
science.ddi_ner
science.ddi_ner.520
[ { "content": "You will be shown an abstract from a biomedical research paper. Given this abstract, your task is to extract all unique entities of the following types: [\"DrugGroup\", \"Drug\", \"UnapprovedDrug\", \"Brand\"].\n\nPlease return the output as a JSON object of the format: {\"Brand\": [\"Aspirin\", ....
science.scientific_lay_summarisation_elife_single_doc_summ
science.scientific_lay_summarisation_elife_single_doc_summ.3333
[ { "content": "Here is a biomedical research article. Craft a summary that conveys the research to a non-specialist audience. While it's acceptable to use scientific terms, you should aim to minimize complicated language and make the text as clear and straightforward as possible.\n\nTitle: Stable transplantation...
science.pico_ner
science.pico_ner.4168
[ { "content": "You will be shown an abstract from a biomedical research paper. Given this abstract, your task is to extract all unique entities of the following types: [\"Intervention\", \"Outcome\", \"Participant\"].\n\nPlease return the output as a JSON object of the format: {\"Participant\": [\"patients with ...
science.mslr2022_ms2_multidoc_summarization
science.mslr2022_ms2_multidoc_summarization.8078
[ { "content": "You will be provided with the titles and abstracts of a collection of medical RCT reports studying a clinical question -- for instance, the efficacy of an intervention on some medical outcome. Please write a few sentences synthesizing the findings of these reports, which could serve as a conclusio...
science.data_reco_mcq_mc
science.data_reco_mcq_mc.46
[ { "content": "You are provided with a research query about an idea in artificial intelligence, keyphrases relevant to it, and some options of datasets relevant to the research question. Carefully read the choices and details about each dataset, and respond with relevant datasets from the choices provided below....
science.scientific_lay_summarisation_plos_single_doc_summ
science.scientific_lay_summarisation_plos_single_doc_summ.16172
[ { "content": "Here is a biomedical research article. Craft a summary that conveys the research to a non-specialist audience. While it's acceptable to use scientific terms, you should aim to minimize complicated language and make the text as clear and straightforward as possible.\n\nTitle: Genome-Wide RNAi Scree...
science.chemprot_re
science.chemprot_re.410
[ { "content": "I will provide you with an abstract section from a PubMed research paper. Your task is to extract relationships between the mentioned chemical named entities, including compounds and genes.\n\nPlease only use these relation types for categorization: ['DOWNREGULATOR', 'SUBSTRATE', 'INDIRECT-REGULAT...
science.chemprot_ner
science.chemprot_ner.819
[ { "content": "You will be shown an abstract from a biomedical research paper. Given this abstract, your task is to extract all unique entities of the following types: [\"Protein\", \"Chemical\"].\n\nPlease return the output as a JSON object of the format: {\"Chemical\" : [\"Dexamethasone\", ...], \"Protein\" : ...
science.healthver_entailment
science.healthver_entailment.5245
[ { "content": "You will be shown a claim about public health and the abstract of a biomedical research paper. Each sentence from the abstract will be on a separate line. Your task is to return a JSON object with two fields:\n\n- \"verdict\": The fact-checking verdict. If the information in the abstract supports ...
science.scicite_classification
science.scicite_classification.6488
[ { "content": "You will be shown a citation sentence from a research paper. Identify the intent behind this citation by choosing from one of the following categories:\n\n- Method: The cited work is referenced for its methodological approach.\n- Background: The cited work provides essential context or foundationa...
science.bioasq_general_qa
science.bioasq_general_qa.746
[ { "content": "You will be provided with some biomedical context below and a question. The answer to the question is in the provided context. Use your best ability to\nanswer the question. Do not include any text in your response other than the answer.\n\nQuestion: What is the difference between the nuclease Cas...
science.genia_ner
science.genia_ner.86
[ { "content": "Given the following abstract from a biomedical research paper, identify and categorize all unique entities. Only choose entities from the following categories: [\"Protein\", \"RNA\", \"CellType\", \"DNA\", \"CellLine\"].\n\nYour response should be a JSON object that looks like this: {\"DNA\" : [\"...
science.mslr2022_cochrane_multidoc_summarization
science.mslr2022_cochrane_multidoc_summarization.2589
[ { "content": "You will be provided with the titles and abstracts of a collection of medical RCT reports studying a clinical question -- for instance, the efficacy of an intervention on some medical outcome. Please write a few sentences synthesizing the findings of these reports, which could serve as a conclusio...
science.chia_ner
science.chia_ner.658
[ { "content": "You will be shown inclusion or exclusion criteria for a clinical trial. Given these criteria, your task is to extract all unique entities of the following types: [\"Condition\", \"Person\", \"Multiplier\", \"Temporal\", \"Qualifier\", \"Drug\", \"Scope\", \"Device\", \"Mood\", \"Measurement\", \"N...
science.scientific_papers_summarization_single_doc_arxiv
science.scientific_papers_summarization_single_doc_arxiv.65624
[ { "content": "Given the full text of a scientific research paper, write an abstract section for the paper. Your response should contain only the abstract without any other text.\n\nArticle text:\nwe consider the setup in fig .\n[ fig : figs1 ] and in particular the 50/50 beam splitter ( bs ) depicted therein .\...
science.craftchem_ner
science.craftchem_ner.4450
[ { "content": "You will be presented with a sentence from biomedical research text. Extract all terms that correspond to chemical entities of biological interest (ChEBI).\nReturn your identified terms in a JSON array, formatted like this: [\"Entity1\", \"Entity2\", ...].\nIf no such entities are detected, respon...
science.ncbi_ner
science.ncbi_ner.263
[ { "content": "In this task, you are given an abstract from a biomedical research paper as input, and your task is to locate all unique named entities within the given input. You should only select entities from the following types: [\"Disease\"]. Also provide the type for each entity.\n\nGenerate the output as ...
science.bc7_litcovid_topic_classification
science.bc7_litcovid_topic_classification.15428
[ { "content": "You will examine a paragraph from COVID-19 scientific literature. Your task is to classify the topics covered in this text by choosing from these categories:\n\n- Epidemic Forecasting: The text discusses projections of COVID-19 spread patterns.\n- Treatment: The paragraph covers therapeutic strate...
science.scientific_lay_summarisation_elife_single_doc_summ
science.scientific_lay_summarisation_elife_single_doc_summ.2752
[ { "content": "Below you will find sections from a biomedical research paper, including the abstract, introduction, and discussion. Please write a summary that would be comprehensible to someone without scientific expertise. You should preserve the key findings and insights. You may use necessary scientific term...
science.nlmgene_ner
science.nlmgene_ner.445
[ { "content": "You will be shown an abstract from a biomedical research paper. Given this abstract, your task is to extract all unique entities of the following types: [\"Gene\"].\n\nPlease return the output as a JSON object of the format: {\"Gene\": [\"IGF\", ...]}. The keys should be entity types and values sh...
science.chia_ner
science.chia_ner.745
[ { "content": "You will be shown inclusion or exclusion criteria for a clinical trial. Given these criteria, your task is to extract all unique entities of the following types: [\"Condition\", \"Person\", \"Multiplier\", \"Temporal\", \"Qualifier\", \"Drug\", \"Scope\", \"Device\", \"Mood\", \"Measurement\", \"N...
science.chemprot_re
science.chemprot_re.655
[ { "content": "I will provide you with an abstract section from a PubMed research paper. Your task is to extract relationships between the mentioned chemical named entities, including compounds and genes.\n\nPlease only use these relation types for categorization: ['DOWNREGULATOR', 'SUBSTRATE', 'INDIRECT-REGULAT...
science.data_reco_mcq_mc
science.data_reco_mcq_mc.2376
[ { "content": "You are provided with a research query about an idea in artificial intelligence, keyphrases relevant to it, and some options of datasets relevant to the research question. Carefully read the choices and details about each dataset, and respond with relevant datasets from the choices provided below....
science.chia_ner
science.chia_ner.1663
[ { "content": "In this task, you are given inclusion or exclusion criteria for a clinical trial as input, and your task is to locate all unique named entities within the given input. You should only select entities from the following types: [\"Condition\", \"Person\", \"Multiplier\", \"Temporal\", \"Qualifier\",...
science.cdr_ner
science.cdr_ner.351
[ { "content": "Given the following abstract from a biomedical research paper, identify and categorize all unique entities. Only choose entities from the following categories: [\"Disease\", \"Chemical\"].\n\nYour response should be a JSON object that looks like this: {\"Chemical\": [\"Naloxone\", ...], \"Disease\...
science.scireviewgen_multidoc_summarization
science.scireviewgen_multidoc_summarization.67683
[ { "content": "Based on the following paper abstracts, a literature review title, and a specific chapter title, you will write a focused literature review chapter that aligns with the given chapter title. Your review should integrate findings from the abstracts, establish relationships between studies, emphasize...
science.bc7_litcovid_topic_classification
science.bc7_litcovid_topic_classification.18748
[ { "content": "You will be presented with a paragraph from a COVID-19 literature. Your task is to classify the topics of this piece of text by choosing from the following categories:\n\n- Epidemic Forecasting: The content relates to predictions about the spread of COVID-19.\n- Treatment: The paragraph discusses ...
science.pubmedqa_qa
science.pubmedqa_qa.228
[ { "content": "Below is an abstract excerpt from a scientific paper, followed by a research question. Based on the provided context, respond to the question with either \"YES\", \"NO\", or \"MAYBE\".\n\nAbstract:\n(BACKGROUND AND PURPOSE) Severe, immediate postprocedural pain and the need for analgesics after ve...
science.anat_em_ner
science.anat_em_ner.156
[ { "content": "You will be shown an abstract from a biomedical research paper. Given this abstract, your task is to extract all unique entities of the following types: [\"AnatomicalEntity\"].\n\nPlease return the output as a JSON object of the format: {\"AnatomicalEntity\": [\"tumor cells\", ...]}. The keys shou...
science.scitldr_aic
science.scitldr_aic.478
[ { "content": "You will be presented with the Abstract, Introduction, and Conclusion sections from a computer science research paper. You will summarize the main contribution into one sentence. Respond with just the summary sentence and nothing else.\n\nPaper text:\n\nDeep learning enables training of large and ...
science.qasa_abstractive_qa
science.qasa_abstractive_qa.893
[ { "content": "You will be shown an excerpt from a computer science research paper, followed by a question about the paper. Please answer the question given the context. Do not include any text in your response other than the answer.\n\nContext: •AE. Only \\mathcal{L}_{E} is considered (\\beta=0), while the Gaus...
science.chia_ner
science.chia_ner.1501
[ { "content": "Given the following inclusion or exclusion criteria for a clinical trial, identify and categorize all unique entities. Only choose entities from the following categories: [\"Condition\", \"Person\", \"Multiplier\", \"Temporal\", \"Qualifier\", \"Drug\", \"Scope\", \"Device\", \"Mood\", \"Measureme...
science.nlmgene_ner
science.nlmgene_ner.61
[ { "content": "Given the following abstract from a biomedical research paper, identify and categorize all unique entities. Only choose entities from the following categories: [\"Gene\"].\n\nYour response should be a JSON object that looks like this: {\"Gene\": [\"IGF\", ...]}. The keys in the object should corre...
science.drug_combo_extraction_re
science.drug_combo_extraction_re.767
[ { "content": "Examine the following paragraph from a biomedical research article. Your goal is to extract all drug combinations mentioned in a specific sentence within the paragraph. Categorize each combination into one of these three groups:\n\n- POS: Represents favorable interaction between combined drugs; su...
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