| --- |
| |
| task_categories: |
| - image-classification |
| - image-segmentation |
| - feature-extraction |
| - zero-shot-classification |
| - fill-mask |
| size_categories: |
| - 10K<n<100K |
| tags: |
| - biology |
| - cells |
| - radiation |
| - microscopy |
| - GeneLab |
| --- |
| |
| # Dataset Card for Dataset GeneLab_BPS_BenchmarkData |
|
|
| ## Dataset Details |
|
|
| This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/ |
| |
| Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks. |
| |
| ### Dataset Description |
| |
| - **Curated by:** Frank Soboczenski |
| - **Funded by [optional]:** [More Information Needed] |
| - **Shared by [optional]:** [More Information Needed] |
| - **Language(s) (NLP):** [More Information Needed] |
| - **License:** There are no restrictions on the use of this data. |
| |
| ## Further Documentation |
| |
| https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub |
|
|
| ### Update Frequency |
|
|
| New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available. |
|
|
| ## Dataset Structure |
|
|
| GeneLab_BPS_BenchmarkData/<br> |
| ├── README.md<br> |
| └── data/<br> |
| ├── High_Energy_Ion_Fe_Nuclei/<br> |
| │ └── .tif<br> |
| │ └── ...<br> |
| └── XRay_irradiated_Nucleiation/<br> |
| └── .tif<br> |
| └── ...<br> |
| |
| ## How to Cite |
|
|
| Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData |
|
|
| ## Publications |
|
|
| - Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes |
| - NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative |
| |
| ## Dataset Card Authors [optional] |
|
|
| Lauren Sanders (lauren.m.sanders@nasa.gov) |
|
|
| ## Dataset Card Contact |
|
|
| Frank Soboczenski (Frank.Soboczenski@york.ac.uk) |
