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hickeroar/LatLon23 | LatLon23/__init__.py | GeoCoord._calc_degreeminutes | def _calc_degreeminutes(decimal_degree):
'''
Calculate degree, minute second from decimal degree
'''
sign = compare(decimal_degree, 0) # Store whether the coordinate is negative or positive
decimal_degree = abs(decimal_degree)
degree = decimal_degree//1 # Truncate degree ... | python | def _calc_degreeminutes(decimal_degree):
'''
Calculate degree, minute second from decimal degree
'''
sign = compare(decimal_degree, 0) # Store whether the coordinate is negative or positive
decimal_degree = abs(decimal_degree)
degree = decimal_degree//1 # Truncate degree ... | [
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hickeroar/LatLon23 | LatLon23/__init__.py | Longitude.set_hemisphere | def set_hemisphere(self, hemi_str):
'''
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'''
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self.degree = abs(self.degree)*-1
self.minute = abs(self.minute)*-1
self.second = abs(self.second)*-1... | python | def set_hemisphere(self, hemi_str):
'''
Given a hemisphere identifier, set the sign of the coordinate to match that hemisphere
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hickeroar/LatLon23 | LatLon23/__init__.py | LatLon.project | def project(self, projection):
'''
Return coordinates transformed to a given projection
Projection should be a basemap or pyproj projection object or similar
'''
x, y = projection(self.lon.decimal_degree, self.lat.decimal_degree)
return (x, y) | python | def project(self, projection):
'''
Return coordinates transformed to a given projection
Projection should be a basemap or pyproj projection object or similar
'''
x, y = projection(self.lon.decimal_degree, self.lat.decimal_degree)
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hickeroar/LatLon23 | LatLon23/__init__.py | LatLon._pyproj_inv | def _pyproj_inv(self, other, ellipse = 'WGS84'):
'''
Perform Pyproj's inv operation on two LatLon objects
Returns the initial heading and reverse heading in degrees, and the distance
in km.
'''
lat1, lon1 = self.lat.decimal_degree, self.lon.decimal_degree
lat2, lo... | python | def _pyproj_inv(self, other, ellipse = 'WGS84'):
'''
Perform Pyproj's inv operation on two LatLon objects
Returns the initial heading and reverse heading in degrees, and the distance
in km.
'''
lat1, lon1 = self.lat.decimal_degree, self.lon.decimal_degree
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hickeroar/LatLon23 | LatLon23/__init__.py | LatLon.to_string | def to_string(self, formatter = 'D'):
'''
Return string representation of lat and lon as a 2-element tuple
using the format specified by formatter
'''
return (self.lat.to_string(formatter), self.lon.to_string(formatter)) | python | def to_string(self, formatter = 'D'):
'''
Return string representation of lat and lon as a 2-element tuple
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hickeroar/LatLon23 | LatLon23/__init__.py | LatLon._sub_latlon | def _sub_latlon(self, other):
'''
Called when subtracting a LatLon object from self
'''
inv = self._pyproj_inv(other)
heading = inv['heading_reverse']
distance = inv['distance']
return GeoVector(initial_heading = heading, distance = distance) | python | def _sub_latlon(self, other):
'''
Called when subtracting a LatLon object from self
'''
inv = self._pyproj_inv(other)
heading = inv['heading_reverse']
distance = inv['distance']
return GeoVector(initial_heading = heading, distance = distance) | [
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hickeroar/LatLon23 | LatLon23/__init__.py | GeoVector._update | def _update(self):
'''
Calculate heading and distance from dx and dy
'''
try:
theta_radians = math.atan(float(self.dy)/self.dx)
except ZeroDivisionError:
if self.dy > 0: theta_radians = 0.5*math.pi
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'''
Calculate heading and distance from dx and dy
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try:
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exosite-labs/pyonep | pyonep/onep.py | DeferredRequests._authstr | def _authstr(self, auth):
"""Convert auth to str so that it can be hashed"""
if type(auth) is dict:
return '{' + ','.join(["{0}:{1}".format(k, auth[k]) for k in sorted(auth.keys())]) + '}'
return auth | python | def _authstr(self, auth):
"""Convert auth to str so that it can be hashed"""
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exosite-labs/pyonep | pyonep/onep.py | OnepV1._call | def _call(self, method, auth, arg, defer, notimeout=False):
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Otherwise, the result is just True.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.create | def create(self, auth, type, desc, defer=False):
""" Create something in Exosite.
Args:
auth: <cik>
type: What thing to create.
desc: Information about thing.
"""
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auth: <cik>
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desc: Information about thing.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.drop | def drop(self, auth, resource, defer=False):
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Args:
auth: <cik>
resource: <ResourceID>
"""
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auth: <cik>
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.flush | def flush(self, auth, resource, options=None, defer=False):
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Args:
auth: <cik>
resource: resource to empty.
options: Time limits.
"""
args = [resource]
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auth: <cik>
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.grant | def grant(self, auth, resource, permissions, ttl=None, defer=False):
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auth: <cik>
resource: Alias or ID of resource.
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auth: <cik>
resource: Alias or ID of resource.
permissions: permissions of resources.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.info | def info(self, auth, resource, options={}, defer=False):
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.listing | def listing(self, auth, types, options=None, resource=None, defer=False):
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if options is None:
# This variant is deprecated
... | python | def listing(self, auth, types, options=None, resource=None, defer=False):
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.map | def map(self, auth, resource, alias, defer=False):
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auth: <cik>
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return self._call('map', auth, ['alias', resource, alias], defer) | python | def map(self, auth, resource, alias, defer=False):
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Args:
auth: <cik>
resource: <ResourceID>
alias: alias to create (map)
"""
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.move | def move(self, auth, resource, destinationresource, options={"aliases": True}, defer=False):
""" Moves a resource from one parent client to another.
Args:
auth: <cik>
resource: Identifed resource to be moved.
destinationresource: resource of client resource is being ... | python | def move(self, auth, resource, destinationresource, options={"aliases": True}, defer=False):
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resource: Identifed resource to be moved.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.revoke | def revoke(self, auth, codetype, code, defer=False):
""" Given an activation code, the associated entity is revoked after which the activation
code can no longer be used.
Args:
auth: Takes the owner's cik
codetype: The type of code to revoke (client | share)
... | python | def revoke(self, auth, codetype, code, defer=False):
""" Given an activation code, the associated entity is revoked after which the activation
code can no longer be used.
Args:
auth: Takes the owner's cik
codetype: The type of code to revoke (client | share)
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.share | def share(self, auth, resource, options={}, defer=False):
""" Generates a share code for the given resource.
Args:
auth: <cik>
resource: The identifier of the resource.
options: Dictonary of options.
"""
return self._call('share', auth, [resource, opt... | python | def share(self, auth, resource, options={}, defer=False):
""" Generates a share code for the given resource.
Args:
auth: <cik>
resource: The identifier of the resource.
options: Dictonary of options.
"""
return self._call('share', auth, [resource, opt... | [
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.update | def update(self, auth, resource, desc={}, defer=False):
""" Updates the description of the resource.
Args:
auth: <cik> for authentication
resource: Resource to be updated
desc: A Dictionary containing the update for the resource.
"""
return self._call... | python | def update(self, auth, resource, desc={}, defer=False):
""" Updates the description of the resource.
Args:
auth: <cik> for authentication
resource: Resource to be updated
desc: A Dictionary containing the update for the resource.
"""
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.usage | def usage(self, auth, resource, metric, starttime, endtime, defer=False):
""" Returns metric usage for client and its subhierarchy.
Args:
auth: <cik> for authentication
resource: ResourceID
metrics: Metric to measure (as string), it may be an entity or consumable.
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""" Returns metric usage for client and its subhierarchy.
Args:
auth: <cik> for authentication
resource: ResourceID
metrics: Metric to measure (as string), it may be an entity or consumable.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.wait | def wait(self, auth, resource, options, defer=False):
""" This is a HTTP Long Polling API which allows a user to wait on specific resources to be
updated.
Args:
auth: <cik> for authentication
resource: <ResourceID> to specify what resource to wait on.
options... | python | def wait(self, auth, resource, options, defer=False):
""" This is a HTTP Long Polling API which allows a user to wait on specific resources to be
updated.
Args:
auth: <cik> for authentication
resource: <ResourceID> to specify what resource to wait on.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.write | def write(self, auth, resource, value, options={}, defer=False):
""" Writes a single value to the resource specified.
Args:
auth: cik for authentication.
resource: resource to write to.
value: value to write
options: options.
"""
return se... | python | def write(self, auth, resource, value, options={}, defer=False):
""" Writes a single value to the resource specified.
Args:
auth: cik for authentication.
resource: resource to write to.
value: value to write
options: options.
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exosite-labs/pyonep | pyonep/onep.py | OnepV1.writegroup | def writegroup(self, auth, entries, defer=False):
""" Writes the given values for the respective resources in the list, all writes have same
timestamp.
Args:
auth: cik for authentication.
entries: List of key, value lists. eg. [[key, value], [k,v],,,]
"""
... | python | def writegroup(self, auth, entries, defer=False):
""" Writes the given values for the respective resources in the list, all writes have same
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Args:
auth: cik for authentication.
entries: List of key, value lists. eg. [[key, value], [k,v],,,]
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SHDShim/pytheos | pytheos/eqn_bm3.py | bm3_p | def bm3_p(v, v0, k0, k0p, p_ref=0.0):
"""
calculate pressure from 3rd order Birch-Murnathan equation
:param v: volume at different pressures
:param v0: volume at reference conditions
:param k0: bulk modulus at reference conditions
:param k0p: pressure derivative of bulk modulus at different con... | python | def bm3_p(v, v0, k0, k0p, p_ref=0.0):
"""
calculate pressure from 3rd order Birch-Murnathan equation
:param v: volume at different pressures
:param v0: volume at reference conditions
:param k0: bulk modulus at reference conditions
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SHDShim/pytheos | pytheos/eqn_bm3.py | cal_p_bm3 | def cal_p_bm3(v, k, p_ref=0.0):
"""
calculate pressure from 3rd order Birch-Murnaghan equation
:param v: volume at different pressures
:param k: [v0, k0, k0p]
:param p_ref: reference pressure, default = 0.
:return: static pressure
"""
vvr = v / k[0]
p = (p_ref - 0.5 * (3. * k[1] - 5... | python | def cal_p_bm3(v, k, p_ref=0.0):
"""
calculate pressure from 3rd order Birch-Murnaghan equation
:param v: volume at different pressures
:param k: [v0, k0, k0p]
:param p_ref: reference pressure, default = 0.
:return: static pressure
"""
vvr = v / k[0]
p = (p_ref - 0.5 * (3. * k[1] - 5... | [
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SHDShim/pytheos | pytheos/eqn_bm3.py | bm3_v_single | def bm3_v_single(p, v0, k0, k0p, p_ref=0.0, min_strain=0.01):
"""
find volume at given pressure using brenth in scipy.optimize
this is for single p value, not vectorized
this cannot handle uncertainties
:param p: pressure
:param v0: volume at reference conditions
:param k0: bulk modulus at ... | python | def bm3_v_single(p, v0, k0, k0p, p_ref=0.0, min_strain=0.01):
"""
find volume at given pressure using brenth in scipy.optimize
this is for single p value, not vectorized
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SHDShim/pytheos | pytheos/eqn_bm3.py | bm3_k | def bm3_k(p, v0, k0, k0p):
"""
calculate bulk modulus, wrapper for cal_k_bm3
cannot handle uncertainties
:param p: pressure
:param v0: volume at reference conditions
:param k0: bulk modulus at reference conditions
:param k0p: pressure derivative of bulk modulus at different conditions
:... | python | def bm3_k(p, v0, k0, k0p):
"""
calculate bulk modulus, wrapper for cal_k_bm3
cannot handle uncertainties
:param p: pressure
:param v0: volume at reference conditions
:param k0: bulk modulus at reference conditions
:param k0p: pressure derivative of bulk modulus at different conditions
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SHDShim/pytheos | pytheos/eqn_bm3.py | cal_k_bm3 | def cal_k_bm3(p, k):
"""
calculate bulk modulus
:param p: pressure
:param k: [v0, k0, k0p]
:return: bulk modulus at high pressure
"""
v = cal_v_bm3(p, k)
return cal_k_bm3_from_v(v, k) | python | def cal_k_bm3(p, k):
"""
calculate bulk modulus
:param p: pressure
:param k: [v0, k0, k0p]
:return: bulk modulus at high pressure
"""
v = cal_v_bm3(p, k)
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SHDShim/pytheos | pytheos/eqn_bm3.py | bm3_g | def bm3_g(p, v0, g0, g0p, k0, k0p):
"""
calculate shear modulus at given pressure.
not fully tested with mdaap.
:param p: pressure
:param v0: volume at reference condition
:param g0: shear modulus at reference condition
:param g0p: pressure derivative of shear modulus at reference condition... | python | def bm3_g(p, v0, g0, g0p, k0, k0p):
"""
calculate shear modulus at given pressure.
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SHDShim/pytheos | pytheos/eqn_bm3.py | cal_g_bm3 | def cal_g_bm3(p, g, k):
"""
calculate shear modulus at given pressure
:param p: pressure
:param g: [g0, g0p]
:param k: [v0, k0, k0p]
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"""
calculate shear modulus at given pressure
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:param k: [v0, k0, k0p]
:return: shear modulus at high pressure
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SHDShim/pytheos | pytheos/eqn_bm3.py | bm3_big_F | def bm3_big_F(p, v, v0):
"""
calculate big F for linearlized form
not fully tested
:param p:
:param f:
:return:
"""
f = bm3_small_f(v, v0)
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"""
calculate big F for linearlized form
not fully tested
:param p:
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f = bm3_small_f(v, v0)
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aiidateam/aiida-codtools | aiida_codtools/parsers/cif_cell_contents.py | CifCellContentsParser.parse_stdout | def parse_stdout(self, filelike):
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con... | python | def parse_stdout(self, filelike):
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xflr6/features | features/__init__.py | make_features | def make_features(context, frmat='table', str_maximal=False):
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Args:
context (str): Formal context table as plain-text string.
frmat: Format of the context string (``'table'``, ``'cxt'``, ``'csv'``).
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SHDShim/pytheos | pytheos/eqn_vinet.py | vinet_p | def vinet_p(v, v0, k0, k0p):
"""
calculate pressure from vinet equation
:param v: unit-cell volume in A^3
:param v0: unit-cell volume in A^3 at 1 bar
:param k0: bulk modulus at reference conditions
:param k0p: pressure derivative of bulk modulus at reference conditions
:return: pressure in ... | python | def vinet_p(v, v0, k0, k0p):
"""
calculate pressure from vinet equation
:param v: unit-cell volume in A^3
:param v0: unit-cell volume in A^3 at 1 bar
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SHDShim/pytheos | pytheos/eqn_vinet.py | vinet_v_single | def vinet_v_single(p, v0, k0, k0p, min_strain=0.01):
"""
find volume at given pressure using brenth in scipy.optimize
this is for single p value, not vectorized
:param p: pressure in GPa
:param v0: unit-cell volume in A^3 at 1 bar
:param k0: bulk modulus at reference conditions
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"""
find volume at given pressure using brenth in scipy.optimize
this is for single p value, not vectorized
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SHDShim/pytheos | pytheos/eqn_vinet.py | vinet_v | def vinet_v(p, v0, k0, k0p, min_strain=0.01):
"""
find volume at given pressure
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:param v0: unit-cell volume in A^3 at 1 bar
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"""
find volume at given pressure
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SHDShim/pytheos | pytheos/eqn_vinet.py | vinet_k | def vinet_k(p, v0, k0, k0p, numerical=False):
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cannot handle uncertainties
:param p: pressure in GPa
:param v0: unit-cell volume in A^3 at 1 bar
:param k0: bulk modulus at reference conditions
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"""
calculate bulk modulus, wrapper for cal_k_vinet
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.user_portals_picker | def user_portals_picker(self):
"""
This function is broken and needs to either be fixed or discarded.
User-Interaction function. Allows user to choose which Portal
to make the active one.
"""
# print("Getting Portals list. This could take a few seconds...")
... | python | def user_portals_picker(self):
"""
This function is broken and needs to either be fixed or discarded.
User-Interaction function. Allows user to choose which Portal
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"""
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Set active portal according to the name passed in 'portal_name'.
Returns dictionary of device 'serial_number: rid'
"""
portals = self.get_portals_list()
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"""
Set active portal according to the name passed in 'portal_name'.
Returns dictionary of device 'serial_number: rid'
"""
portals = self.get_portals_list()
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.delete_device | def delete_device(self, rid):
"""
Deletes device object with given rid
http://docs.exosite.com/portals/#delete-device
"""
headers = {
'User-Agent': self.user_agent(),
'Content-Type': self.content_type()
}
headers.update... | python | def delete_device(self, rid):
"""
Deletes device object with given rid
http://docs.exosite.com/portals/#delete-device
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headers = {
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List data sources of a portal device with rid 'device_rid'.
http://docs.exosite.com/portals/#list-device-data-source
"""
headers = {
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headers.update(self... | python | def list_device_data_sources(self, device_rid):
"""
List data sources of a portal device with rid 'device_rid'.
http://docs.exosite.com/portals/#list-device-data-source
"""
headers = {
'User-Agent': self.user_agent(),
}
headers.update(self... | [
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.get_data_source_bulk_request | def get_data_source_bulk_request(self, rids, limit=5):
"""
This grabs each datasource and its multiple datapoints for a particular device.
"""
headers = {
'User-Agent': self.user_agent(),
'Content-Type': self.content_type()
}
headers.up... | python | def get_data_source_bulk_request(self, rids, limit=5):
"""
This grabs each datasource and its multiple datapoints for a particular device.
"""
headers = {
'User-Agent': self.user_agent(),
'Content-Type': self.content_type()
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.get_all_devices_in_portal | def get_all_devices_in_portal(self):
"""
This loops through the get_multiple_devices method 10 rids at a time.
"""
rids = self.get_portal_by_name(
self.portal_name()
)[2][1]['info']['aliases']
# print("RIDS: {0}".format(rids))
... | python | def get_all_devices_in_portal(self):
"""
This loops through the get_multiple_devices method 10 rids at a time.
"""
rids = self.get_portal_by_name(
self.portal_name()
)[2][1]['info']['aliases']
# print("RIDS: {0}".format(rids))
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.map_aliases_to_device_objects | def map_aliases_to_device_objects(self):
"""
A device object knows its rid, but not its alias.
A portal object knows its device rids and aliases.
This function adds an 'portals_aliases' key to all of the
device objects so they can be sorted by alias.
"""... | python | def map_aliases_to_device_objects(self):
"""
A device object knows its rid, but not its alias.
A portal object knows its device rids and aliases.
This function adds an 'portals_aliases' key to all of the
device objects so they can be sorted by alias.
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.search_for_devices_by_serial_number | def search_for_devices_by_serial_number(self, sn):
"""
Returns a list of device objects that match the serial number
in param 'sn'.
This will match partial serial numbers.
"""
import re
sn_search = re.compile(sn)
matches = []
for dev... | python | def search_for_devices_by_serial_number(self, sn):
"""
Returns a list of device objects that match the serial number
in param 'sn'.
This will match partial serial numbers.
"""
import re
sn_search = re.compile(sn)
matches = []
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.print_device_list | def print_device_list(self, device_list=None):
"""
Optional parameter is a list of device objects. If omitted, will
just print all portal devices objects.
"""
dev_list = device_list if device_list is not None else self.get_all_devices_in_portal()
for dev in dev_l... | python | def print_device_list(self, device_list=None):
"""
Optional parameter is a list of device objects. If omitted, will
just print all portal devices objects.
"""
dev_list = device_list if device_list is not None else self.get_all_devices_in_portal()
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.print_sorted_device_list | def print_sorted_device_list(self, device_list=None, sort_key='sn'):
"""
Takes in a sort key and prints the device list according to that sort.
Default sorts on serial number.
Current supported sort options are:
- name
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- ... | python | def print_sorted_device_list(self, device_list=None, sort_key='sn'):
"""
Takes in a sort key and prints the device list according to that sort.
Default sorts on serial number.
Current supported sort options are:
- name
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.get_user_id_from_email | def get_user_id_from_email(self, email):
""" Uses the get-all-user-accounts Portals API to retrieve the
user-id by supplying an email. """
accts = self.get_all_user_accounts()
for acct in accts:
if acct['email'] == email:
return acct['id']
return None | python | def get_user_id_from_email(self, email):
""" Uses the get-all-user-accounts Portals API to retrieve the
user-id by supplying an email. """
accts = self.get_all_user_accounts()
for acct in accts:
if acct['email'] == email:
return acct['id']
return None | [
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.get_user_permission_from_email | def get_user_permission_from_email(self, email):
""" Returns a user's permissions object when given the user email."""
_id = self.get_user_id_from_email(email)
return self.get_user_permission(_id) | python | def get_user_permission_from_email(self, email):
""" Returns a user's permissions object when given the user email."""
_id = self.get_user_id_from_email(email)
return self.get_user_permission(_id) | [
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.add_dplist_permission_for_user_on_portal | def add_dplist_permission_for_user_on_portal(self, user_email, portal_id):
""" Adds the 'd_p_list' permission to a user object when provided
a user_email and portal_id."""
_id = self.get_user_id_from_email(user_email)
print(self.get_user_permission_from_email(user_email))
ret... | python | def add_dplist_permission_for_user_on_portal(self, user_email, portal_id):
""" Adds the 'd_p_list' permission to a user object when provided
a user_email and portal_id."""
_id = self.get_user_id_from_email(user_email)
print(self.get_user_permission_from_email(user_email))
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exosite-labs/pyonep | pyonep/portals/__init__.py | Portals.get_portal_cik | def get_portal_cik(self, portal_name):
""" Retrieves portal object according to 'portal_name' and
returns its cik. """
portal = self.get_portal_by_name(portal_name)
cik = portal[2][1]['info']['key']
return cik | python | def get_portal_cik(self, portal_name):
""" Retrieves portal object according to 'portal_name' and
returns its cik. """
portal = self.get_portal_by_name(portal_name)
cik = portal[2][1]['info']['key']
return cik | [
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chaoss/grimoirelab-cereslib | examples/areas_code.py | init_write_index | def init_write_index(es_write, es_write_index):
"""Initializes ES write index
"""
logging.info("Initializing index: " + es_write_index)
es_write.indices.delete(es_write_index, ignore=[400, 404])
es_write.indices.create(es_write_index, body=MAPPING_GIT) | python | def init_write_index(es_write, es_write_index):
"""Initializes ES write index
"""
logging.info("Initializing index: " + es_write_index)
es_write.indices.delete(es_write_index, ignore=[400, 404])
es_write.indices.create(es_write_index, body=MAPPING_GIT) | [
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | PairProgramming.enrich | def enrich(self, column1, column2):
""" This class splits those commits where column1 and column2
values are different
:param column1: column to compare to column2
:param column2: column to compare to column1
:type column1: string
:type column2: string
:returns:... | python | def enrich(self, column1, column2):
""" This class splits those commits where column1 and column2
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | FileType.enrich | def enrich(self, column):
""" This method adds a new column depending on the extension
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:param column: column where the file path is found
:type column: string
:return: returns the original dataframe with a new column named as
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""" This method adds a new column depending on the extension
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:param column: column where the file path is found
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | Projects.enrich | def enrich(self, column, projects):
""" This method adds a new column named as 'project'
that contains information about the associated project
that the event in 'column' belongs to.
:param column: column with information related to the project
:type column: string
:para... | python | def enrich(self, column, projects):
""" This method adds a new column named as 'project'
that contains information about the associated project
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:param projects: information about item - project
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | EmailFlag.__parse_flags | def __parse_flags(self, body):
"""Parse flags from a message"""
flags = []
values = []
lines = body.split('\n')
for l in lines:
for name in self.FLAGS_REGEX:
m = re.match(self.FLAGS_REGEX[name], l)
if m:
flags.appen... | python | def __parse_flags(self, body):
"""Parse flags from a message"""
flags = []
values = []
lines = body.split('\n')
for l in lines:
for name in self.FLAGS_REGEX:
m = re.match(self.FLAGS_REGEX[name], l)
if m:
flags.appen... | [
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | SplitEmailDomain.enrich | def enrich(self, column):
""" This enricher returns the same dataframe
with a new column named 'domain'.
That column is the result of splitting the
email address of another column. If there is
not a proper email address an 'unknown'
domain is returned.
:param col... | python | def enrich(self, column):
""" This enricher returns the same dataframe
with a new column named 'domain'.
That column is the result of splitting the
email address of another column. If there is
not a proper email address an 'unknown'
domain is returned.
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | ToUTF8.__remove_surrogates | def __remove_surrogates(self, s, method='replace'):
""" Remove surrogates in the specified string
"""
if type(s) == list and len(s) == 1:
if self.__is_surrogate_escaped(s[0]):
return s[0].encode('utf-8', method).decode('utf-8')
else:
retur... | python | def __remove_surrogates(self, s, method='replace'):
""" Remove surrogates in the specified string
"""
if type(s) == list and len(s) == 1:
if self.__is_surrogate_escaped(s[0]):
return s[0].encode('utf-8', method).decode('utf-8')
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | ToUTF8.__is_surrogate_escaped | def __is_surrogate_escaped(self, text):
""" Checks if surrogate is escaped
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try:
text.encode('utf-8')
except UnicodeEncodeError as e:
if e.reason == 'surrogates not allowed':
return True
return False | python | def __is_surrogate_escaped(self, text):
""" Checks if surrogate is escaped
"""
try:
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except UnicodeEncodeError as e:
if e.reason == 'surrogates not allowed':
return True
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | ToUTF8.enrich | def enrich(self, columns):
""" This method convert to utf-8 the provided columns
:param columns: list of columns to convert to
:type columns: list of strings
:return: original dataframe with converted strings
:rtype: pandas.DataFrame
"""
for column in columns:
... | python | def enrich(self, columns):
""" This method convert to utf-8 the provided columns
:param columns: list of columns to convert to
:type columns: list of strings
:return: original dataframe with converted strings
:rtype: pandas.DataFrame
"""
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | SplitEmail.__parse_addr | def __parse_addr(self, addr):
""" Parse email addresses
"""
from email.utils import parseaddr
value = parseaddr(addr)
return value[0], value[1] | python | def __parse_addr(self, addr):
""" Parse email addresses
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from email.utils import parseaddr
value = parseaddr(addr)
return value[0], value[1] | [
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | SplitLists.enrich | def enrich(self, columns):
""" This method appends at the end of the dataframe as many
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provided columns.
This assumes that the length of the lists for the several
specified columns is the same. As an example, for the row A
... | python | def enrich(self, columns):
""" This method appends at the end of the dataframe as many
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | MaxMin.enrich | def enrich(self, columns, groupby):
""" This method calculates the maximum and minimum value
of a given set of columns depending on another column.
This is the usual group by clause in SQL.
:param columns: list of columns to apply the max and min values
:param groupby: column us... | python | def enrich(self, columns, groupby):
""" This method calculates the maximum and minimum value
of a given set of columns depending on another column.
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:param columns: list of columns to apply the max and min values
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | Gender.enrich | def enrich(self, column):
""" This method calculates thanks to the genderize.io API the gender
of a given name.
This method initially assumes that for the given
string, only the first word is the one containing the name
eg: Daniel Izquierdo <dizquierdo@bitergia.com>, Daniel woul... | python | def enrich(self, column):
""" This method calculates thanks to the genderize.io API the gender
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chaoss/grimoirelab-cereslib | cereslib/enrich/enrich.py | Uuid.enrich | def enrich(self, columns):
""" Merges the original dataframe with corresponding entity uuids based
on the given columns. Also merges other additional information
associated to uuids provided in the uuids dataframe, if any.
:param columns: columns to match for merging
:type colum... | python | def enrich(self, columns):
""" Merges the original dataframe with corresponding entity uuids based
on the given columns. Also merges other additional information
associated to uuids provided in the uuids dataframe, if any.
:param columns: columns to match for merging
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aiidateam/aiida-codtools | aiida_codtools/common/cli.py | echo_utc | def echo_utc(string):
"""Echo the string to standard out, prefixed with the current date and time in UTC format.
:param string: string to echo
"""
from datetime import datetime
click.echo('{} | {}'.format(datetime.utcnow().isoformat(), string)) | python | def echo_utc(string):
"""Echo the string to standard out, prefixed with the current date and time in UTC format.
:param string: string to echo
"""
from datetime import datetime
click.echo('{} | {}'.format(datetime.utcnow().isoformat(), string)) | [
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aiidateam/aiida-codtools | aiida_codtools/common/cli.py | CliParameters.from_string | def from_string(cls, string):
"""Parse a single string representing all command line parameters."""
if string is None:
string = ''
if not isinstance(string, six.string_types):
raise TypeError('string has to be a string type, got: {}'.format(type(string)))
dictio... | python | def from_string(cls, string):
"""Parse a single string representing all command line parameters."""
if string is None:
string = ''
if not isinstance(string, six.string_types):
raise TypeError('string has to be a string type, got: {}'.format(type(string)))
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aiidateam/aiida-codtools | aiida_codtools/common/cli.py | CliParameters.from_dictionary | def from_dictionary(cls, dictionary):
"""Parse a dictionary representing all command line parameters."""
if not isinstance(dictionary, dict):
raise TypeError('dictionary has to be a dict type, got: {}'.format(type(dictionary)))
return cls(dictionary) | python | def from_dictionary(cls, dictionary):
"""Parse a dictionary representing all command line parameters."""
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aiidateam/aiida-codtools | aiida_codtools/common/cli.py | CliParameters.get_list | def get_list(self):
"""Return the command line parameters as a list of options, their values and arguments.
:return: list of options, their optional values and arguments
"""
result = []
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co... | python | def get_list(self):
"""Return the command line parameters as a list of options, their values and arguments.
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"""
result = []
for key, value in self.parameters.items():
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aiidateam/aiida-codtools | aiida_codtools/common/cli.py | CliRunner.run | def run(self, daemon=False):
"""Launch the process with the given inputs, by default running in the current interpreter.
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"""
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# If daemon is True, submit the process a... | python | def run(self, daemon=False):
"""Launch the process with the given inputs, by default running in the current interpreter.
:param daemon: boolean, if True, will submit the process instead of running it.
"""
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:type xml: etree
:param xpath: XPath to find children
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:param xml: An xml tree
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Capitains/MyCapytain | MyCapytain/resources/collections/cts.py | _parse_structured_metadata | def _parse_structured_metadata(obj, xml):
""" Parse an XML object for structured metadata
:param obj: Object whose metadata are parsed
:param xml: XML that needs to be parsed
"""
for metadata in xml.xpath("cpt:structured-metadata/*", namespaces=XPATH_NAMESPACES):
tag = metadata.tag
... | python | def _parse_structured_metadata(obj, xml):
""" Parse an XML object for structured metadata
:param obj: Object whose metadata are parsed
:param xml: XML that needs to be parsed
"""
for metadata in xml.xpath("cpt:structured-metadata/*", namespaces=XPATH_NAMESPACES):
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Capitains/MyCapytain | MyCapytain/resources/collections/cts.py | XmlCtsCitation.ingest | def ingest(cls, resource, element=None, xpath="ti:citation"):
""" Ingest xml to create a citation
:param resource: XML on which to do xpath
:param element: Element where the citation should be stored
:param xpath: XPath to use to retrieve citation
:return: XmlCtsCitation
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""" Ingest xml to create a citation
:param resource: XML on which to do xpath
:param element: Element where the citation should be stored
:param xpath: XPath to use to retrieve citation
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Capitains/MyCapytain | MyCapytain/resources/collections/cts.py | XmlCtsTextMetadata.parse_metadata | def parse_metadata(cls, obj, xml):
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:param obj: Obj to set metadata of
:type obj: XmlCtsTextMetadata
:param xml: An xml representation object
:type xml: lxml.etree._Element
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""" Parse a resource to feed the object
:param obj: Obj to set metadata of
:type obj: XmlCtsTextMetadata
:param xml: An xml representation object
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Capitains/MyCapytain | MyCapytain/resources/collections/cts.py | XmlCtsTextgroupMetadata.parse | def parse(cls, resource, parent=None):
""" Parse a textgroup resource
:param resource: Element representing the textgroup
:param parent: Parent of the textgroup
:param _cls_dict: Dictionary of classes to generate subclasses
"""
xml = xmlparser(resource)
o = cls(u... | python | def parse(cls, resource, parent=None):
""" Parse a textgroup resource
:param resource: Element representing the textgroup
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infothrill/python-launchd | example.py | install | def install(label, plist):
'''
Utility function to store a new .plist file and load it
:param label: job label
:param plist: a property list dictionary
'''
fname = launchd.plist.write(label, plist)
launchd.load(fname) | python | def install(label, plist):
'''
Utility function to store a new .plist file and load it
:param label: job label
:param plist: a property list dictionary
'''
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infothrill/python-launchd | example.py | uninstall | def uninstall(label):
'''
Utility function to remove a .plist file and unload it
:param label: job label
'''
if launchd.LaunchdJob(label).exists():
fname = launchd.plist.discover_filename(label)
launchd.unload(fname)
os.unlink(fname) | python | def uninstall(label):
'''
Utility function to remove a .plist file and unload it
:param label: job label
'''
if launchd.LaunchdJob(label).exists():
fname = launchd.plist.discover_filename(label)
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Grumbel/procmem | procmem/hexdump.py | write_hex | def write_hex(fout, buf, offset, width=16):
"""Write the content of 'buf' out in a hexdump style
Args:
fout: file object to write to
buf: the buffer to be pretty printed
offset: the starting offset of the buffer
width: how many bytes should be displayed per row
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"""Write the content of 'buf' out in a hexdump style
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fout: file object to write to
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offset: the starting offset of the buffer
width: how many bytes should be displayed per row
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jedie/PyHardLinkBackup | PyHardLinkBackup/phlb/config.py | PyHardLinkBackupConfig._read_config | def _read_config(self):
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"""
returns the config as a dict.
"""
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Capitains/MyCapytain | MyCapytain/common/constants.py | bind_graph | def bind_graph(graph=None):
""" Bind a graph with generic MyCapytain prefixes
:param graph: Graph (Optional)
:return: Bound graph
"""
if graph is None:
graph = Graph()
for prefix, ns in GRAPH_BINDINGS.items():
graph.bind(prefix, ns, True)
return graph | python | def bind_graph(graph=None):
""" Bind a graph with generic MyCapytain prefixes
:param graph: Graph (Optional)
:return: Bound graph
"""
if graph is None:
graph = Graph()
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SHDShim/pytheos | pytheos/eqn_electronic.py | zharkov_pel | def zharkov_pel(v, temp, v0, e0, g, n, z, t_ref=300.,
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"""
calculate electronic contributions in pressure for the Zharkov equation
the equation can be found in Sokolova and Dorogokupets 2013
:param v: unit-cell volume in A^3
:param temp: temperature in K
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"""
calculate electronic contributions in pressure for the Zharkov equation
the equation can be found in Sokolova and Dorogokupets 2013
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SHDShim/pytheos | pytheos/eqn_electronic.py | tsuchiya_pel | def tsuchiya_pel(v, temp, v0, a, b, c, d, n, z, three_r=3. * constants.R,
t_ref=300.):
"""
calculate electronic contributions in pressure for the Tsuchiya equation
:param v: unit-cell volume in A^3
:param temp: temperature in K
:param v0: unit-cell volume in A^3 at 1 bar
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"""
calculate electronic contributions in pressure for the Tsuchiya equation
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aiidateam/aiida-codtools | aiida_codtools/calculations/cif_base.py | CifBaseCalculation._validate_resources | def _validate_resources(self):
"""Validate the resources defined in the options."""
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raise exceptions.FeatureNo... | python | def _validate_resources(self):
"""Validate the resources defined in the options."""
resources = self.options.resources
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aiidateam/aiida-codtools | aiida_codtools/calculations/cif_base.py | CifBaseCalculation.prepare_for_submission | def prepare_for_submission(self, folder):
"""This method is called prior to job submission with a set of calculation input nodes.
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SHDShim/pytheos | pytheos/eqn_hugoniot.py | hugoniot_p | def hugoniot_p(rho, rho0, c0, s):
"""
calculate pressure along a Hugoniot
:param rho: density in g/cm^3
:param rho0: density at 1 bar in g/cm^3
:param c0: velocity at 1 bar in km/s
:param s: slope of the velocity change
:return: pressure in GPa
"""
eta = 1. - (rho0 / rho)
Ph = r... | python | def hugoniot_p(rho, rho0, c0, s):
"""
calculate pressure along a Hugoniot
:param rho: density in g/cm^3
:param rho0: density at 1 bar in g/cm^3
:param c0: velocity at 1 bar in km/s
:param s: slope of the velocity change
:return: pressure in GPa
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SHDShim/pytheos | pytheos/eqn_hugoniot.py | _dT_h_delta | def _dT_h_delta(T_in_kK, eta, k, threenk, c_v):
"""
internal function for calculation of temperature along a Hugoniot
:param T_in_kK: temperature in kK scale, see Jamieson for detail
:param eta: = 1 - rho0/rho
:param k: = [rho0, c0, s, gamma0, q, theta0]
:param threenk: see the definition in Ja... | python | def _dT_h_delta(T_in_kK, eta, k, threenk, c_v):
"""
internal function for calculation of temperature along a Hugoniot
:param T_in_kK: temperature in kK scale, see Jamieson for detail
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SHDShim/pytheos | pytheos/eqn_hugoniot.py | hugoniot_t_single | def hugoniot_t_single(rho, rho0, c0, s, gamma0, q, theta0, n, mass,
three_r=3. * constants.R, t_ref=300., c_v=0.):
"""
internal function to calculate pressure along Hugoniot
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:param rho0: density at 1 bar in g/cm^3
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three_r=3. * constants.R, t_ref=300., c_v=0.):
"""
internal function to calculate pressure along Hugoniot
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SHDShim/pytheos | pytheos/eqn_hugoniot.py | hugoniot_t | def hugoniot_t(rho, rho0, c0, s, gamma0, q, theta0, n, mass,
three_r=3. * constants.R, t_ref=300., c_v=0.):
"""
calculate temperature along a hugoniot
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:param rho0: density at 1 bar in g/cm^3
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"""
calculate temperature along a hugoniot
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iduartgomez/rustypy | src/rustypy/rswrapper/pytypes.py | PyString.to_str | def to_str(self):
"""Consumes the wrapper and returns a Python string.
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val = c_backend.pystring_get_str(self._ptr)
delattr(self, '_ptr')
setattr(self, 'to_str', _dangling_pointer)
retur... | python | def to_str(self):
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val = c_backend.pystring_get_str(self._ptr)
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erijo/tellive-py | tellive/tellstick.py | TellstickLiveClient.servers | def servers(self, server='api.telldus.com', port=http.HTTPS_PORT):
"""Fetch list of servers that can be connected to.
:return: list of (address, port) tuples
"""
logging.debug("Fetching server list from %s:%d", server, port)
conn = http.HTTPSConnection(server, port, context=sel... | python | def servers(self, server='api.telldus.com', port=http.HTTPS_PORT):
"""Fetch list of servers that can be connected to.
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ChrisBeaumont/smother | smother/git.py | execute | def execute(cmd):
"""Run a shell command and return stdout"""
proc = Popen(cmd, stdout=PIPE)
stdout, _ = proc.communicate()
if proc.returncode != 0:
raise CalledProcessError(proc.returncode, " ".join(cmd))
return stdout.decode('utf8') | python | def execute(cmd):
"""Run a shell command and return stdout"""
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stdout, _ = proc.communicate()
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SHDShim/pytheos | pytheos/etc.py | isuncertainties | def isuncertainties(arg_list):
"""
check if the input list contains any elements with uncertainties class
:param arg_list: list of arguments
:return: True/False
"""
for arg in arg_list:
if isinstance(arg, (list, tuple)) and isinstance(arg[0], uct.UFloat):
return True
... | python | def isuncertainties(arg_list):
"""
check if the input list contains any elements with uncertainties class
:param arg_list: list of arguments
:return: True/False
"""
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potatolondon/gae-pytz | makezoneinfo.py | filter_tzfiles | def filter_tzfiles(name_list):
"""Returns a list of tuples for names that are tz data files."""
for src_name in name_list:
# pytz-2012j/pytz/zoneinfo/Indian/Christmas
parts = src_name.split('/')
if len(parts) > 3 and parts[2] == 'zoneinfo':
dst_name = '/'.join(parts[2:])
... | python | def filter_tzfiles(name_list):
"""Returns a list of tuples for names that are tz data files."""
for src_name in name_list:
# pytz-2012j/pytz/zoneinfo/Indian/Christmas
parts = src_name.split('/')
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klen/muffin-admin | muffin_admin/plugin.py | Plugin.setup | def setup(self, app):
""" Initialize the application. """
super().setup(app)
self.handlers = OrderedDict()
# Connect admin templates
app.ps.jinja2.cfg.template_folders.append(op.join(PLUGIN_ROOT, 'templates'))
@app.ps.jinja2.filter
def admtest(value, a, b=None)... | python | def setup(self, app):
""" Initialize the application. """
super().setup(app)
self.handlers = OrderedDict()
# Connect admin templates
app.ps.jinja2.cfg.template_folders.append(op.join(PLUGIN_ROOT, 'templates'))
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klen/muffin-admin | muffin_admin/plugin.py | Plugin.register | def register(self, *handlers, **params):
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for handler in handlers:
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handler = type(
handler._meta.db_table.title() + 'Admin',
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""" Ensure that handler is not registered. """
for handler in handlers:
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klen/muffin-admin | muffin_admin/plugin.py | Plugin.authorization | def authorization(self, func):
""" Define a authorization process. """
if self.app is None:
raise PluginException('The plugin must be installed to application.')
self.authorize = muffin.to_coroutine(func)
return func | python | def authorization(self, func):
""" Define a authorization process. """
if self.app is None:
raise PluginException('The plugin must be installed to application.')
self.authorize = muffin.to_coroutine(func)
return func | [
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jedie/PyHardLinkBackup | PyHardLinkBackup/phlb/filesystem_walk.py | scandir_limited | def scandir_limited(top, limit, deep=0):
"""
yields only directories with the given deep limit
:param top: source path
:param limit: how deep should be scanned?
:param deep: internal deep number
:return: yields os.DirEntry() instances
"""
deep += 1
try:
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"""
yields only directories with the given deep limit
:param top: source path
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:param deep: internal deep number
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