| --- |
| dataset_info: |
| features: |
| - name: Entry |
| dtype: string |
| - name: classes |
| dtype: string |
| - name: Sequence |
| dtype: string |
| - name: labels |
| dtype: int64 |
| splits: |
| - name: train |
| num_bytes: 102966725 |
| num_examples: 252729 |
| - name: valid |
| num_bytes: 2035250 |
| num_examples: 5000 |
| - name: test |
| num_bytes: 2022479 |
| num_examples: 5000 |
| download_size: 103184837 |
| dataset_size: 107024454 |
| configs: |
| - config_name: default |
| data_files: |
| - split: train |
| path: data/train-* |
| - split: valid |
| path: data/valid-* |
| - split: test |
| path: data/test-* |
| --- |
| UniProt search (7/22/2025): * (Swiss-Prot reviewed entries only) download TSV with Taxonomic lineage (Ids), sequence, and length. |
|
|
| Curation steps: |
|
|
| - Filtered for sequence length >=20 and <=2048 |
| - Extract Taxonomic IDs (domain, kingdom, phylum, class, order, family, genus, species) from taxonomic_lineage_ids column |
| - Keep entry, class, and sequence information |
| - Drop N/A |
| - CD-HIT using Docker at 80% similarity threshold and n=5 |
| - Keep representative sequences |
| - Create labels based on classes |
| - Remove classes/examples with fewer than 100 samples |
| - Stratified split: first get test set (5,000), then eval (5,000), rest is train |
