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Convert the integer UTC time value into a local datetime.
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One possible schedule function for simulated annealing
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Write a BEL namespace for identifiers, names, name hash, and mappings to the given directory.
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Show all messages in the `messages` key of the given dict.
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Return true if MARC 'tag' matches a 'pattern'. 'pattern' is plain text, with % as wildcard Both parameters must be 3 characters long strings. .. doctest:: >>> _tag_matches_pattern("909", "909") True >>> _tag_matches_pattern("909", "9%9") True >>> _tag_matches_patt...
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Create a new droplet Parameters ---------- name: str Name of new droplet region: str slug for region (e.g., sfo1, nyc1) size: str slug for droplet size (e.g., 512mb, 1024mb) image: int or str image id (e.g., 12352) or slug ...
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Initializes Grid from a CCP4 file.
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Checks if all elements from set2 are in set1. :param set1: a set of values :param set2: a set of values :param warn: the error message that should be thrown when the sets are not containd :return: returns true if all values of set2 are in set1
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Return status of all blocks.
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Render this annotation list in HTML Returns ------- rendered : str An HTML table containing this annotation's data.
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For a 2D array and mask, map the values of all unmasked pixels to a 1D array. The pixel coordinate origin is at the top left corner of the 2D array and goes right-wards and downwards, such that for an array of shape (3,3) where all pixels are unmasked: - pixel [0,0] of the 2D array will correspond to inde...
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Create a single vector in the vector service Args: wkt (str): wkt representation of the geometry item_type (str): item_type of the vector ingest_source (str): source of the vector attributes: a set of key-value pairs of attributes Returns: id...
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Return json from querying Web Api Args: view: django view function. request: http request object got from django. Returns: json format dictionary
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Return true if file is a valid RAR file.
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Convenience method to inspect the available argument values in human-readable format. The ordering of keys is determined by how quickly they vary. The exclude list allows specific keys to be excluded for readability (e.g. to hide long, absolute filenames).
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Creates a position http://dev.wheniwork.com/#create-update-position
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Get the row index of samples that are included. If samples are in the 'excluded' they were already filtered out of 'samples' during _get_samples.
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Calculates the next motion frame for the flock.
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Return the NCD between two strings using zlib compression. Parameters ---------- src : str Source string for comparison tar : str Target string for comparison Returns ------- float Compression distance Examples ...
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Validated google-v2 arguments.
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Checks if a given path is local, raise an exception if not. This is used in filesystem functions that do not support remote operations yet. :param unicode path: :raises NotImplementedForRemotePathError: If the given path is not local
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r'''Determines which phase's property should be set as a default, given the phase a chemical is, and the property values of various phases. For the case of liquid-gas phase, returns None. If the property is not available for the current phase, or if the current phase is not known, returns None. Paramet...
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Set the document version. Raise SPDXValueError if malformed value, CardinalityError if already defined
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Class method that will return a Droplet object by ID. Args: api_token (str): token droplet_id (int): droplet id
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Assesses production capacity. Assesses the capacity of the model to produce the precursors for the reaction and absorb the production of the reaction while the reaction is operating at, or above, the specified cutoff. Parameters ---------- model : cobra.Model The cobra model to assess ...
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Handle connecting for the first time.
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Check for permissions and acquire a lock. On success return new lock dictionary. On error raise a DAVError with an embedded DAVErrorCondition.
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Load songs from local filepaths. Parameters: filepaths (list or str): Filepath(s) to search for music files. include_filters (list): A list of ``(field, pattern)`` tuples. Fields are any valid mutagen metadata fields. Patterns are Python regex patterns. Local songs are filtered out if the given metada...
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Replaces all slashes and backslashes with the target separator StandardPath: We are defining that the standard-path is the one with only back-slashes in it, either on Windows or any other platform. :param bool strip: If True, removes additional slashes from the end of the path.
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Run the actual simulation.
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Returns the root mean square error betwwen a and b
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Write to this and the redirected stream
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If the header `key` does not exist, then set it to `value`. Returns the header value.
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Create the encoder instance for our test and return it.
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Creates a recording surface for the bot to draw on :param size: The width and height of bot
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Worker to distribute work to jit funcs. Wraps everything on an engine to run single-threaded to maximize efficiency for multi-processing.
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Navigate an open ftplib.FTP to appropriate directory for ClinVar VCF files. Args: ftp: (type: ftplib.FTP) an open connection to ftp.ncbi.nlm.nih.gov build: (type: string) genome build, either 'b37' or 'b38'
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Signal handler for when a registered model has been saved.
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Updates field object with data from a PrefProxy object. :param models.Field field_obj: :param PrefProxy pref_proxy:
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Returns a Pipeline objects for the job.
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SnapEngage set-up template tag. Renders Javascript code to set-up SnapEngage chat. You must supply your widget ID in the ``SNAPENGAGE_WIDGET_ID`` setting.
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Creates a scan with the given host ips Returns the scan id of the created object.
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Compute the temporal network of the data, and return it as a pandas.DataFrame Parameters ---------- gtfs : gtfspy.GTFS start_time_ut: int | None start time of the time span (in unix time) end_time_ut: int | None end time of the time span (in unix time) route_type: int | None ...
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Delete job. Uses [Caching](/references/polyaxon-cli/#caching) Example: \b ```bash $ polyaxon job delete ```
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iterator for the most significant sentences, up to a specified limit
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Returns the elements HTML start tag
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Gets called by the CallbackManager if a new message was received
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Create the challenge on the server
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Batch subscribe or unsubscribe list members. Only the members array is required in the request body parameters. Within the members array, each member requires an email_address and either a status or status_if_new. The update_existing parameter will also be considered required to help pr...
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RPOP a value off of the ``src`` list and LPUSH it on to the ``dst`` list. Returns the value.
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Run the reverse causal reasoning algorithm on a graph. Steps: 1. Get all downstream controlled things into map (that have at least 4 downstream things) 2. calculate population of all things that are downstream controlled .. note:: Assumes all nodes have been pre-tagged with data :param pybel.BEL...
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Returns the status of the executor via probing the execution providers.
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read file as is
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generateFromNumbers'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'v...
Generate a sequence from a list of numbers. Note: Any `None` in the list of numbers is considered a reset. @param numbers (list) List of numbers @return (list) Generated sequence
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Copies the contents of vector x1 into vector x2. @param x1 (array) binary vector to be copied @param x2 (array) binary vector where x1 is copied
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'includes'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Does this schedule include the provided time? query_date and query_time are date and time objects, interpreted in this schedule's timezone
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Start the containers and link them together
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Make the presence stanza a MUC room join request. :Parameters: - `password`: password to the room. - `history_maxchars`: limit of the total number of characters in history. - `history_maxstanzas`: limit of the total number of messages in history. ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_file_relative_path_by_name'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'c...
Get file relative path given the file name. If file name is redundant in different directories in the repository, this method ensures to return all or some of the files according to skip value. Parameters: #. name (string): The file name. #. skip (None, integer): As file...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stop_image_acquisition'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Stops image acquisition. :return: None.
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Handle the file rename through the PUT deposit file. Permission required: `update_permission_factory`. :param pid: Pid object (from url). :param record: Record object resolved from the pid. :param key: Unique identifier for the file in the deposit.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'summarize_paths'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '11']}; {'id': '4', 'type': 'identifier', 'children': [],...
Gnerate the upper and lower bounds of an n standard deviation cone of forecasted cumulative returns. Parameters ---------- samples : numpy.ndarray Alternative paths, or series of possible outcomes. cone_std : list of int/float Number of standard devations to use in the boundaries of...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lookup_entities'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Search for entities by phone number, email, or gaia_id.
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makes all ids SBML compliant
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Add the given lxml representation of the BPMN file to the parser's set. :param svg: Optionally, provide the text data for the SVG of the BPMN file :param filename: Optionally, provide the source filename.
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Draw the mesh using the assigned mesh program :param projection_matrix: projection_matrix (bytes) :param view_matrix: view_matrix (bytes) :param camera_matrix: camera_matrix (bytes)
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Completes measuring time interval and updates counter.
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Delete a specific template. :param template_id: The unique id for the template. :type template_id: :py:class:`str`
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Update algorithm definition type dictionaries
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Handle the enrollment of enterprise learner in the provided course. Based on `enterprise_uuid` in URL, the view will decide which enterprise customer's course enrollment record should be created. Depending on the value of query parameter `course_mode` then learner will be either redire...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update_backend'}; {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13', '16']}; {'id': '4', 'type': 'default_parameter...
Install the backend from the given devpi index at the given version on the target host and restart the service. If version is None, it defaults to the latest version Optionally, build and upload the application first from local sources. This requires a full backend development environment on the machine r...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_runpf_worker'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tas...
This runs the runpf function.
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Builds a scope and request body into a WSGI environ object.
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Utility function to query slack for a particular user :param username: The username of the user to lookup :return: SlackUser object or None
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Stop experiment. Uses [Caching](/references/polyaxon-cli/#caching) Examples: \b ```bash $ polyaxon experiment stop ``` \b ```bash $ polyaxon experiment -xp 2 stop ```
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Validator for string lists to be used with `add_setting`.
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Parses response of an exchange token request. Most providers return JSON but some (e.g. Facebook) return a url-encoded string. Args: content: The body of a response Returns: Content as a dictionary object. Note that the dict could be empty, i.e. {}. That basically indicates a ...
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Load a cobra model stored as a .mat file Parameters ---------- infile_path: str path to the file to to read variable_name: str, optional The variable name of the model in the .mat file. If this is not specified, then the first MATLAB variable which looks like a COBRA mod...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_referenced_libs'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Returns all libs that are referenced in specs.apps.depends.libs
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This returns the residual between the model mags and the actual mags. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, [amplitude_1, amplitude_2, amplitude_3, ..., amplitude_X], [phase...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_graph_from_data'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [],...
Run the GIES algorithm. Args: data (pandas.DataFrame): DataFrame containing the data Returns: networkx.DiGraph: Solution given by the GIES algorithm.
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Run final activities after a model has run. These include recording and logging the final score
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flatten extra args
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Ramp activation function. Parameters ---------- x : Tensor input. v_min : float cap input to v_min as a lower bound. v_max : float cap input to v_max as a upper bound. name : str The function name (optional). Returns ------- Tensor A ``Tensor...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'recombine'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Genetic recombination of two themes using cut and splice technique.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_user_to_allow'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [],...
Add a user to the given acl allow block.
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Replaces instances of pattern in a string with a replacement. The compiled regex is kept in a cache shared by Match and Search. Args: pattern: regex pattern rep: replacement text s: search string Returns: string with replacements made (or original string if no replacements)
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Install one or more packages. If *update* is ``True``, the package definitions will be updated first, using :py:func:`~burlap.deb.update_index`. Extra *options* may be passed to ``apt-get`` if necessary. Example:: import burlap # Update index, then install a single package b...
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Disassemble all instructions in bytecode :param bytecode: an evm bytecode (binary) :type bytecode: str | bytes | bytearray | iterator :param pc: program counter of the first instruction(optional) :type pc: int :param fork: fork name (optional) :type fork: str :re...
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Returns the right half of the split complement.
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deleteMultiple - Delete multiple objects @param objs - List of objects @return - Number of objects deleted
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Create an example CSV validator for patient demographic data.
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Add a unique check on a single column or combination of columns. Arguments --------- `key` - a single field name (string) specifying a field in which all values are expected to be unique, or a sequence of field names (tuple or list of strings) specifying a compound key ...
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set the value of delta to reflect the current codepage
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Calls `perf_attrib` using inputs, and displays outputs using `utils.print_table`.
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Write manage.py in the current directory
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Returns the atom object corresponding to an atom number
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Returns encodings for all the records
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This just uncompresses the sqlitecurve in gzip format. FIXME: this doesn't work with gzip < 1.6 or non-GNU gzip (probably).
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Returns a dict of all temporary values in custom configuration file