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Datasets:
imageomics
/
TreeOfLife-200M-Embeddings

Tasks:
Feature Extraction
Modalities:
Text
Image
Formats:
parquet
Languages:
English
Size:
100M - 1B
ArXiv:
Tags:
biology
biodiversity
embeddings
bioclip
tree-of-life
imageomics
Libraries:
Datasets
Dask
Polars
License:
Dataset card Data Studio Files
xet
 Community
6

Fix: TOL-200M Catalog Metadata Alignment

#6
by netzhang - opened
base: refs/heads/main
←
from: refs/pr/6
Discussion Files changed
+53
-38
netzhang
 HDR Imageomics Institute org
•
edited 5 days ago

Apply surgical fix to the embedding parquets to align with the metadata update on the new TOL-200M catalog:

Parquet file structure, sorting, row-group size, compression method... all preserved.

Update dataset card to refer to new catalog revision after pr/20 is merged.

Fix kingdom label: incertae -> incertae sedis2c5b1b86
 Backfill identifier URL for 9,551 fish UUIDs5cb02d0f
netzhang
 HDR Imageomics Institute org

@egrace479 follow-up: dataset card change is unstaged in my local repo.

{5F20BA3B-0C52-410C-8956-7C1FAE0481DD}

please pin me when that new DOI for TOL-200M is generated, I'll update the placeholder and this PR should be good for review.
Update catalog revision hash & citation to tol-200m doi + bioclip 23fae9c1f
egrace479
 HDR Imageomics Institute org
•
edited 3 days ago

@netzhang , links added in your last commit should be to the DOI Revision commit: 94bbc0b90cd26cbb15f94d3144941026f4b41213

I fixed it in 75cc9ee5. This should be good to merge and remove gating.
Point to latest revision of TOL-200M75cc9ee5
egrace479 changed pull request status to open
egrace479 changed pull request status to merged

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