Instructions to use nlpie/tiny-clinicalbert with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use nlpie/tiny-clinicalbert with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="nlpie/tiny-clinicalbert")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("nlpie/tiny-clinicalbert") model = AutoModelForMaskedLM.from_pretrained("nlpie/tiny-clinicalbert") - Notebooks
- Google Colab
- Kaggle
| title: README | |
| emoji: 🏃 | |
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| sdk: static | |
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| license: mit | |
| tags: | |
| - oxford-legacy | |
| # Model Description | |
| TinyClinicalBERT is a distilled version of the [BioClinicalBERT](https://huggingface.co/emilyalsentzer/Bio_ClinicalBERT) which is distilled for 3 epochs using a total batch size of 192 on the MIMIC-III notes dataset. | |
| # Distillation Procedure | |
| This model uses a unique distillation method called ‘transformer-layer distillation’ which is applied on each layer of the student to align the attention maps and the hidden states of the student with those of the teacher. | |
| # Architecture and Initialisation | |
| This model uses 4 hidden layers with a hidden dimension size and an embedding size of 768 resulting in a total of 15M parameters. Due to the model's small hidden dimension size, it uses random initialisation. | |
| # Citation | |
| If you use this model, please consider citing the following paper: | |
| ```bibtex | |
| @article{rohanian2023lightweight, | |
| title={Lightweight transformers for clinical natural language processing}, | |
| author={Rohanian, Omid and Nouriborji, Mohammadmahdi and Jauncey, Hannah and Kouchaki, Samaneh and Nooralahzadeh, Farhad and Clifton, Lei and Merson, Laura and Clifton, David A and ISARIC Clinical Characterisation Group and others}, | |
| journal={Natural Language Engineering}, | |
| pages={1--28}, | |
| year={2023}, | |
| publisher={Cambridge University Press} | |
| } | |
| ``` | |
| # Support | |
| If this model helps your work, you can keep the project running with a one-off or monthly contribution: | |
| https://github.com/sponsors/nlpie-research |